Subpopulation - OmicsDI

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Unknown (7741)
Genomics (1817)
Transcriptomics (1493)
Proteomics (135)
Other (52)
Models (24)
Methylation profiling (24)
Metabolomics (13)
Clinical (3)
Genomic (2)

Organisms

Homo sapiens (816)
Mus musculus (780)
Rattus norvegicus (24)
Danio rerio (18)
Sus scrofa (15)
Saccharomyces cerevisiae (12)
Bacillus subtilis (11)
Escherichia coli (9)
Drosophila melanogaster (6)
Arabidopsis thaliana (6)
Vibrio cholerae (4)
Pseudomonas aeruginosa (4)
Macaca mulatta (4)
Escherichia coli K-12 (3)
Macaca nemestrina (3)
Staphylococcus aureus (3)
Anopheles gambiae (2)
Saccharomyces cerevisiae SK1 (2)
Streptococcus mutans (2)
Myxococcus xanthus (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Plasmodium falciparum (2)
Thymus (1)
Octodon degus (1)
Microtus duodecimcostatus (1)
soil metagenome (1)
Corynebacterium glutamicum (1)
Xenopus laevis (1)
Oncorhynchus mykiss (1)
Burkholderia cenocepacia (1)

Organisms

Mus musculus (652)
Homo sapiens (600)
Danio rerio (14)
Rattus norvegicus (14)
Escherichia coli (8)
Saccharomyces cerevisiae (8)
Sus scrofa (7)
Bacillus subtilis (6)
Drosophila melanogaster (5)
Oryza sativa (5)
Arabidopsis thaliana (5)
unidentified (5)
Cricetulus griseus (4)
Phascolarctos cinereus (3)
Macaca mulatta (3)
Mycobacterium tuberculosis (3)
Bos taurus (3)
Mchenga conophoros (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (2)
Streptococcus mutans (2)
Macaca nemestrina (2)
Legionella pneumophila (2)
Oryza sativa Indica Group (2)
Equus caballus (2)
Serratia marcescens (2)
Pseudomonas aeruginosa (2)
Acinetobacter baumannii (2)
Streptococcus pyogenes (2)
Staphylococcus saprophyticus subsp. saprophyticus MS1146 (1)
Microtus ochrogaster (1)

Repository

ENA (1664)
geo (1308)
biostudies-arrayexpress (375)
pride (100)
EGA (34)
BioModels (22)
MassIVE (22)
MetaboLights (10)
iProX (9)
jPOST (4)
GNPS (3)
NODE (3)
dbGaP (2)
FAIRDOMHub (2)
ExpressionAtlas (1)
EVA (1)

Tissue

Cell culture (22)
Epithelial cell (10)
Brain (9)
Stem cell (6)
Blood (5)
Blood plasma (5)
Permanent cell line cell (4)
Primary cell (4)
Pancreas (3)
Blood cell (3)
Cardiac muscle cell (3)
Heart (3)
Monocyte (3)
Plant cell (3)
Whole body (3)
Astrocyte (2)
Dendritic cell (2)
Extracellular vesicle (2)
Lung (2)
Macrophage (2)
Neuron (2)
T cell (2)
Cell line (1)
Adipose-derived stromal cell (1)
Bacterial protein (1)
Bone marrow (1)
Breast (1)
Breast cancer cell (1)
Brown fat cell (1)
Cell suspension culture (1)

Disease

Breast cancer (7)
Brain cancer (4)
Normal (3)
Malignant neoplasm of ovary (3)
Glioblastoma (2)
Colorectal Neoplasms (2)
Brain glioblastoma multiforme (2)
Cervix carcinoma (2)
Disease free (2)
Tuberculosis (2)
Papillary Carcinoma (1)
Type 1 Diabetes Mellitus (1)
Squamous cell carcinoma (1)
Hypersensitivity (1)
Pancreatic cancer (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Cryptococcosis (1)
Neurodegenerative disease (1)
Osteosarcoma (1)
Periventricular nodular heterotopia (1)
Plasmodium falciparum malaria (1)
Pulmonary tuberculosis (1)
Skin melanoma (1)
Type 1 diabetes mellitus (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (100)
Shotgun proteomics (55)
Bottom-up proteomics (17)
Data-dependent acquisition (14)
Data-independent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (11)
Mass spectrometry assay (5)
Mass spectrometry (5)
Gel-based experiment (5)
Top-down proteomics (5)
Illumina HiSeq 2500, ILLUMINA (2)
All-ion fragmentation (2)
SWATH MS (2)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
DiaPASEF (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
Illumina HiSeq 4000 (11)
NextSeq 500 (10)
Illumina HiSeq 2500 (8)
Illumina HiSeq 2000 (4)
Illumina MiSeq (3)
Bio-Rad CFX96 Real-time System (2)
Microsyringe for intraperitoneal injection (1)
Computational server/cluster, Software: R (v4.3.x), Seurat package (v5.1.0) (1)
Biological safety cabinet, Centrifuge, Cell strainer, Automated cell counter/Hemocytometer (1)
Surgical dissection tools (1)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
BD Rhapsody system (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
10x Chromium Controller (1)
15 mL Falcon tubes (1)
ScriptSeq v2 Complete Gold Kit (Epidemiology)(Epicentre), ScriptSeq Index PCR primers (Set 1) (Epicentre) (1)
GenePix 4000B [Axon] (1)
GeneSpring software V12 (Agilent). (1)
Infors HT Multitron shaker (1)
GeneSpring software V12 (Agilent) (1)
BD FACSARIA II (1)
Illumina HiScanSQ (1)
AB SOLiD 4 System (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)

Publication Date

2025 (225)
2023 (183)
2024 (179)
2026 (164)
2022 (145)
2020 (136)
2021 (131)
2014 (80)
2016 (79)
2013 (74)
2019 (70)
2015 (68)
2018 (63)
2012 (59)
2010 (55)
2017 (44)
2011 (40)
2009 (18)
2008 (17)
2007 (12)
2006 (10)
2005 (3)

UNIPROT ID/AC

O15105 (12)
P37173 (12)
P01137 (12)
Q15796 (12)
Q13485 (12)
P36897 (12)
P13800 (1)
P04189 (1)

CHEBI ID

CHEBI:28013 (2)
CHEBI:16264 (2)
CHEBI:17659 (2)
CHEBI:15414 (2)
CHEBI:16680 (2)
CHEBI:17202 (2)
CHEBI:17858 (2)
CHEBI:15978 (2)
CHEBI:17138 (2)
CHEBI:16238 (2)
CHEBI:16695 (2)
CHEBI:16708 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15351 (2)
CHEBI:16108 (2)
CHEBI:17552 (2)
CHEBI:15422 (2)
CHEBI:32816 (2)
CHEBI:16027 (2)
CHEBI:16761 (2)
CHEBI:16908 (2)
CHEBI:17345 (2)
CHEBI:32805 (2)
CHEBI:44897 (2)
CHEBI:30915 (2)
CHEBI:16919 (2)
CHEBI:16347 (2)
CHEBI:17490 (2)
CHEBI:57589 (2)

Metabolite Name

UDP (2)
IMP (2)
FAD (2)
ATP (2)
ADP (2)
GDP (2)
NADH (2)
Alpha (1)
Aldehydo-D-ribose 5-phosphate (1)
N(omega) (1)
N(6) (1)
(R)-mevalonic acid (1)
2-amino-2-deoxy-D-glucopyranose (1)
Beta-D-fructofuranose 1 (1)
Keto-D-fructose 6-phosphate (1)
Acetyl-L-carnitine (2.0) (1)
N-Ac-Muramate (1)
N-Ac-Glucosamine-6P (1)
N-Ac-Glucosamine (1)
OphthalmicAcid (1)
Butyryl-L-carnitine (4.0) (1)
Hexanoyl-L-carnitine (6.0) (1)
S-Adenosyl-Homocysteine (1)
S-Adenosyl-Methionine (1)
UDP-N-Ac-Glucosamine (1)
Myristoyl-L-carnitine (14.0) (1)
AcetylCoA (1)
Palmitoyl-L-carnitine (16.0) (1)
Stearoyl-L-carnitine (18.0) (1)
GLY (1)

First Public Date

2025 (233)
2024 (209)
2023 (197)
2026 (175)
2022 (152)
2020 (144)
2014 (142)
2021 (126)
2019 (75)
2018 (74)
2017 (52)
2015 (38)
2016 (34)
2013 (11)
2012 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (20)
Differential equation model (1)

Study status

Not yet recruiting (2)
Completed (1)

Lab affiliation

Cardiovascular Proteomics group, Spanish National Center for Cardiovascular Research, Madrid, Spain (2)
Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town (2)
Head of Proteomics (2)
Michigan State University, Plant Research Laboratory (2)
University of Copenhagen Faculty of Health and Medical Sciences Novo Nordisk Foundation Center for Protein Research Proteomics Program (2)
1. Institute of Basic Medical Sciences, Faculty of Medicine, University of Oslo, Oslo, Norway. 2. Centre for Cancer Cell Reprogramming, Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway. (1)
AG Joachim Kopka Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)
Augusta University (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising GERMANY (1)
Biomedical research centre University of British Columbia (1)
Biosciences and Bioengineering, IIT Bombay, India (1)
Botnar Research Centre, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, UK (1)
CABIMER (1)
CABIMER-University of Sevilla (1)
Cardiovascular proteomics group, Spanish National Center for Cardiovascular Research, Madrid, Spain (1)
Center for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington 98109, USA Departments of Pediatrics and Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Center for Metabolic Disease Research (CMDR) Lewis Katz School of Medicine at Temple University Medical Education and Research Building, Room 1060 3500 N. Broad Street Philadelphia, PA 19140, USA (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST), Hong Kong (1)
Department of Biochemistry and Molecular Biology, Drexel University College of Medicine. Translational Cellular Oncology Program, Sidney Kimmel Cancer Center, Thomas Jefferson University (1)
Department of Biochemistry and Molecular Biology, Oklahoma Center for Respiratory and Infectious Diseases, Oklahoma State University, Stillwater, Oklahoma, USA (1)
Department of Bioengineering, Stanford University, Stanford, CA, USA (1)
Department of Biomedical and Clinical Sciences, Faculty of Medicine and Health Sciences, Linköping University, Sweden (1)
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel (1)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark (1)
Department of Clinical Science, University of Bergen, Norway (1)
Department of Health Sciences and Technology (D-HEST) Institute of Molecular Systems Biology (IMSB) ETH Zürich (1)
Department of Immunology and Cell Biology, Faculty of Medecine and Health Sciences, Universite de Sherbrooke, Sherbrooke, Canada (1)
Department of Medical Microbiology & Immunology, Faculty of Medicine & Dentistry, University of Alberta (1)
Department of Microbiology, The Ohio State University, USA (1)

Keyword

Serplulimab (1)
MSS (1)
Cancer Stem Cells (1)
Chemo-Sensitivity Assay (1)
Cancer Treatment (1)
Tirelizumab (1)
Fuquinitinib (1)
Vitamin E (1)
Fruquintinib (1)
Tislelizumab (1)

IsPrivate

False (22)

Submitter Keywords

Immuno-oncology (2)
Manuscript Accepted (1)

Classification

bacteria (37)
fungi (2)
helminths (1)
viruses (1)
protozoa (1)

Study type

Transcription profiling by array (242)
RNA-seq of coding RNA (38)
Comparative genomic hybridization by array (27)
RNA-seq of coding RNA from single cells (15)
ChIP-seq (7)
Transcription profiling by RT-PCR (5)
Unknown experiment type (4)
Human - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Other (3)
DNA-seq (3)
Methylation profiling by high throughput sequencing (3)
Interventional (3)
RIP-chip by array (2)
Animal - Single-cell sequencing (2)
Genotyping by array (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Baseline (1)
Animal - One-color microarray (1)
Human - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)

Release Date

2022 (828)
2025 (782)
2021 (772)
2023 (769)
2024 (682)
2020 (655)
2019 (476)
2018 (442)
2016 (417)
2017 (386)
2015 (340)
2014 (318)
2013 (221)
2012 (217)
2010 (159)
2011 (151)
2026 (115)
2009 (103)
2008 (83)
2007 (44)
2006 (43)
2005 (30)
2003 (17)
2004 (14)
2000 (14)
2002 (11)
1999 (10)
2001 (8)
1998 (5)
1997 (3)

Location

China (2)
Italy (1)

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Subpopulation-specific transcriptome analysis of cytometrically sorted Streptococcus mutans cells: Analysis of CSP-mediated intrapopulation diversity

Transcriptional profiling of the competence-stimulating peptide (CSP) response in Streptococcus mutans of FACS-separated subpopulations and mixed cells of a clonal culture. CSP-mediated competence development in S. mutans is a transient and biphasic process since only a subpopulation induces expres...

ORGANISM(S): Streptococcus mutans

2011-02-01 | E-GEOD-25284 | biostudies-arrayexpress

An epigenetically distinct breast cancer cell subpopulation promotes collective invasion

A distinct highly invasive subpopulation was identified in breast cancer cell lines. The molecular characteristics of these cells was investigated, revealing a set of genes whose high expression confers the ability to invade. Total RNA isolated from the invasive subpopulation from 2 cells lines wa...

ORGANISM(S): Homo sapiens

2014-06-19 | E-GEOD-58643 | biostudies-arrayexpress

Gene expression pattern in CXCR4+ and CXCR4- subpopulation of breast cancer cells

The goal of this study was to identify signalling molecules downstream of CXCR4 in breast cancer cells. For this purpose, we sorted CXCR4-positive and CXCR4-negative cells from MDA-MB-231 breast cancer cell line by flow cytometry and performed microarrays analysis. Three sets of samples, each in qua...

ORGANISM(S): Homo sapiens

2010-04-28 | E-GEOD-15893 | biostudies-arrayexpress

ORG.one project Iguana iguana (Saba subpopulation) long reads

PRJEB74640 | ENA

STAT3 labels a subpopulation of reactive astrocytes required for brain metastasis

The brain microenvironment imposes a particularly intense selective pressure on metastasis initiating cells, but successful metastasis bypass this control through mechanisms that are poorly understood. Reactive astrocytes are key components of this microenvironment, as they have been observed to con...

ORGANISM(S): Mus musculus (Mouse)

2018-07-16 | PXD008956 | Pride

NanoSTRING dendritic cell subpopulation

PRJNA975120 | ENA

Monocyte subpopulation miRNA profiling

PRJNA706359 | ENA

A systematic evaluation of isolation techniques and freeze-thaw effects on plasma extracellular vesicle heterogeneity and subpopulation profiling

The data submitted is for the proteomics data published in the paper: A systematic evaluation of isolation techniques and freeze-thaw effects on plasma extracellular vesicle heterogeneity and subpopulation profiling

ORGANISM(S): Homo sapiens (Human)

2025-06-30 | PXD058661 | Pride

Proteomics Ev isolation Plasma Extracellular vesicles Small evs

Identifying subpopulation methylation profiles from sequencing of heterogeneous samples with DXM

PRJNA540605 | ENA

Ependymoma subpopulation lineages underlie clinical classification and outcome (microarray data set)

PRJNA517721 | ENA

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