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ProteomicsLow-input proteomics using lauryl maltose neopentyl glycol
We developed a sample preparation method for low-input proteomics using lauryl maltose neopentyl glycol. Using the developed method, we performed proteome analysis of coIP samples.
ORGANISM(S): Homo Sapiens (human) 
2024-03-06 | PXD048100 | JPOST Repository
ProteomicsLow-input proteomics using lauryl maltose neopentyl glycol
We developed a sample preparation method for low-input proteomics using lauryl maltose neopentyl glycol. Using the developed method, we performed proteome analysis of 100ng of HEK293T proteins, coIP samples, and serum extracellular vesicles, and further challenged label-free single-cell proteomics o...
ORGANISM(S): Homo Sapiens (human) Bos Taurus 
2024-03-06 | PXD044605 | JPOST Repository
GenomicsTranscriptional regulation by H3K122 acetylation in the lateral surface of the histone octamer
We characterize the acetylation of H3K122 for the first time. Towards this we mapped the genomic distribution of H3K122Ac, identified the enzyme introducing H3K122Ac, and addressed the functional contribution H3K122Ac to transcription. We found that H3K122Ac is associated with chromatin marks and ge...
ORGANISM(S): Homo sapiens 
2013-02-14 | E-GEOD-35954 | biostudies-arrayexpress
TranscriptomicsSTRT RNAseq of THP-1 monocytic cells exposed to surface modified-gold nanoparticles
Transcriptome comparison to assess the responses of human monocytic cells (THP-1) to gold-nanoparticles (Au-NPs) of two different diameter sizes (5 or 20 nm) with different surface functional groups, i.e., alkylammonium bromide, alkyl sodium carboxylate, or poly(ethylene glycol) (PEG)-terminated thi...
ORGANISM(S): Homo sapiens 
2019-06-04 | E-MTAB-7093 | biostudies-arrayexpress
TranscriptomicsMetatranscriptome of surface gravel plain soils from the hyperarid Central Namib Desert
Three-day metatranscriptome of surface gravel plain soils from the Central Namib Desert. Samples were collected at four times (6:00, 12:00, 18:00 and 24:00h) on each day (n=12). rRNA-depleted RNA was used to construct stranded libraries with the ScriptSeq v2 complete kit (Epicentre) adding unique ba...
ORGANISM(S): soil metagenome 
2018-08-01 | E-MTAB-6601 | biostudies-arrayexpress
ProteomicsConidial Surface associated proteins of Aspergillus flavus and Aspergillus fumigatus
The conidial surface associated proteins of A.flavus and A. fumigatus were extracted using 0.5 M NaCl and identified using shotgun proteomics approach. Incubation of the spores in mQ was used as reference.
ORGANISM(S): Aspergillus fumigatus Af293 Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) 
2025-01-17 | PXD022824 | Pride
A. flavus Mass spectrometry A. fumigatus Conidial surface 
UnknownVertical migration by bulk phytoplankton sustains biodiversity and nutrient input to the surface ocean.
Not available
S-EPMC6981162 | biostudies-literature
ProteomicsSurface AMP Deaminase 2 as a Novel Regulator Modifying Extracellular Adenine Nucleotide Metabolism
Adenine nucleotides represent crucial immunomodulators in the extracellular environment. The ectonucleotidases CD39 and CD73 are responsible for the sequential catabolism of ATP to adenosine via AMP, thereby promoting an anti-inflammatory milieu induced by the “adenosine halo”. AMPD2 intracellularly...
ORGANISM(S): Homo sapiens (Human) 
2021-11-03 | PXD022350 | Pride
Human Monocytes Epithelial cells 
TranscriptomicsComparison of cornea to the surface tissues, dermis and epidermis, in adult zebrafish
The gene expression profile of the adult zebrafish cornea was assessed in comparison to those from closely associated surface tissues: the dermis and epidermis. This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Danio rerio 
2015-02-19 | E-GEOD-24599 | biostudies-arrayexpress
UnknownModelling of surface river plume using set-up and input data files of Delft-3D model.
Not available
S-EPMC7334385 | biostudies-literature
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