Suzuki K K - OmicsDI

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Unknown (8749)
Transcriptomics (177)
Proteomics (93)
Metabolomics (20)
Genomics (17)

Organisms

Homo sapiens (77)
Mus musculus (53)
Arabidopsis thaliana (17)
Escherichia coli (7)
Xenopus laevis (5)
cellular organisms (5)
Rattus norvegicus (3)
Lateolabrax japonicus (2)
Oryza sativa (2)
Nicotiana tabacum (2)
Bartonella henselae str. Houston-1 (2)
Swertia japonica (1)
Hymenochirus boettgeri (1)
Drosophila mojavensis (1)
marine metagenome (1)
Synechocystis sp. PCC 6803 (1)
Bombyx mori (1)
Pan troglodytes (1)
Apis mellifera (1)
Schizosaccharomyces pombe (1)
Solanum lycopersicum (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Acinetobacter baumannii (1)
Panonychus citri (1)
Pseudomonas aeruginosa (1)
Staphylococcus aureus (1)
Tetranychus kanzawai (1)

Organisms

Rattus norvegicus (1)

Repository

biostudies-arrayexpress (191)
pride (49)
jPOST (38)
MetaboLights (19)
MassIVE (5)
EGA (2)
geo (1)
GNPS (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (17)
Cell lysate (4)
Plant cell (3)
Whole body (3)
Brain (2)
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Kidney (2)
Aorta (1)
Aorta smooth muscle tissue (1)
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Bone marrow cell (1)
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Embryo (1)
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Fibroblast (1)
Leaf (1)
Liver (1)
Macrophage (1)
Multinuclear osteoclast (1)
Oocyte (1)
Osteoclast (1)
Small intestine mucosa (1)

Disease

Disease free (2)
Gliosarcoma (1)
Adenocarcinoma (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
IgA glomerulonephritis (1)
Medulloblastoma (1)
Neuroblastoma (1)
Wiskott-Aldrich syndrome (1)

Technology Type

Mass Spectrometry (49)
Mass spectrometry (19)
Shotgun proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (9)
Gel-based experiment (9)
Data-dependent acquisition (6)
SWATH MS (2)
Illumina HiSeq 2500, ILLUMINA (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Gas Chromatography MS - positive (2)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000 (1)
Agilent 6530 QTOF (1)
LC-MS/MS (1)
LTQ (1)
LTQ Orbitrap Velos (1)
NHMFL 21T FT-ICR-MS (1)
Q Exactive HF-X (1)
Thermo Scientific LTQ FT Ultra (1)
GCT Premier (Waters) (1)
Diode array detection MS - - reverse phase (1)
Xevo G2 QTOF (Waters) (1)
Q Exactive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2010 (49)
2011 (28)
2013 (24)
2016 (21)
2012 (19)
2023 (19)
2014 (17)
2020 (16)
2021 (15)
2025 (15)
2015 (12)
2022 (12)
2008 (10)
2024 (9)
2017 (8)
2009 (8)
2026 (7)
2019 (6)
2018 (5)
2006 (3)
2007 (1)
2004 (1)

CHEBI ID

CHEBI:16811 (9)
CHEBI:17822 (9)
CHEBI:28044 (9)
CHEBI:22653 (8)
CHEBI:15741 (8)
CHEBI:18186 (8)
CHEBI:30769 (8)
CHEBI:24898 (7)
CHEBI:16335 (7)
CHEBI:25094 (7)
CHEBI:26271 (7)
CHEBI:18012 (7)
CHEBI:18237 (7)
CHEBI:27266 (6)
CHEBI:17521 (6)
CHEBI:15428 (6)
CHEBI:22660 (6)
CHEBI:25017 (6)
CHEBI:28790 (6)
CHEBI:28300 (6)
CHEBI:17992 (6)
CHEBI:16765 (5)
CHEBI:24266 (5)
CHEBI:15978 (5)
CHEBI:16449 (5)
CHEBI:17268 (5)
CHEBI:15940 (5)
CHEBI:27570 (5)
CHEBI:7916 (5)
CHEBI:26986 (5)

Metabolite Name

Proline (5)
Adenosine (5)
Inosine (4)
Sucrose (4)
Asparagine (4)
Methionine (4)
Pantothenic acid (4)
Carnitine (3)
Valine (3)
Serine (3)
Glycine (3)
Allantoin (3)
Guanosine (3)
Uridine (3)
Palmitic acid (3)
Succinic acid (3)
Leucine (3)
Isoleucine (3)
CORTICOSTERONE (2)
Oxaloacetate (2)
Deoxyuridine (2)
L-arginine (2)
S-adenosyl-L-homocysteine (2)
L-lysine (2)
Campesterol (2)
Nicotinic acid (2)
Stearidonate (18:4n3) (2)
Trans-urocanate (2)
Cysteine (2)
L-histidine (2)

First Public Date

2014 (1)

Study type

Transcription profiling by array (101)
Unknown experiment type (30)
RNA-seq of coding RNA (23)
ChIP-seq (9)
Methylation profiling by array (6)
Transcription profiling by SAGE (3)
Other (3)
Methylation profiling by high throughput sequencing (3)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2022 (1042)
2025 (961)
2021 (921)
2023 (889)
2024 (749)
2020 (739)
2019 (508)
2018 (466)
2017 (415)
2016 (396)
2015 (316)
2014 (287)
2013 (213)
2012 (172)
2026 (152)
2011 (144)
2010 (139)
2009 (88)
2008 (74)
2006 (52)
2007 (46)
2005 (33)
2004 (31)
2003 (25)
2000 (23)
2002 (19)
2001 (19)
1998 (10)
1999 (9)
1997 (1)

Lab affiliation

Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (14)
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan. (4)
Biotechnology Research Center, The University of Tokyo, Tokyo, Japan. (2)
Department of Nephrology, Tokyo Medical and Dental University (TMDU), Tokyo 113-8510, Japan (2)
1.Division of Infectious Diseases, Brigham and Women's Hospital, Boston, MA, USA 2.Department of Microbiology, Harvard Medical School, Boston, MA, USA 3.Howard Hughes Medical Institute, Boston, MA, USA (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Biomolecular characterization unit, Center for Sustainable Resource (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
Biotechnology Research Center, The University of Tokyo (1)
Biotechnology Research Center, The University of Tokyo. (1)
Cancer Research UK Scotland Institute (Formerly the Cancer Research UK Beatson Institute) Garscube Estate Switchback Road Bearsden Glasgow, G61 1BD (1)
Cell Signal Unit, Okinawa Institute of Science and Technology Graduate University, Japan (1)
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo (1)
Department of Neurology, Tokushima University Graduate School of Biomedical Sciences, Tokushima, Japan (1)
Department of Pathology, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan. (1)
Department of Pharmacy, The University of Tokyo Hospital (1)
Department of Redox Molecular Medicine, Tohoku University Graduate School of Medicine (1)
Division of Plant Environmental Responses, National Institute for Basic Biology, Japan (1)
Faculty of Medicine Department of Chemistry Belgrade Serbia (1)
Grad. Sch. Agr. Life Sci., Univ. Tokyo (1)
IGFL, ENS de Lyon, CNRS UMR 5242, Université Lyon1, INRA USC1370, France (1)
Institute For Systems Biology (1)
Institute for Molecular Medicine I, Medical Faculty, Heinrich-Heine-University Duesseldorf, Universitaetsstrasse 1, 40225 Duesseldorf, Germany (1)
Institute of Integrative Biology, University of Liverpool, Liverpool, UK (1)
Laboratory for Mucosal Immunity, Center for Integrative Medical Sciences, RIKEN Yokohama Institute, Yokohama, Japan (1)
Max Planck Institute for Molecular Bioemedicine, Bioanalytical Mass Spectroemtry (1)
Neurosurgeon & Senior Scientist Developmental and Stem Cell Biology, The Hospital for Sick Children, Canada (1)
Proteome Research (AG Stühler) Heinrich Heine University Düsseldorf Universitätsstraße 1 40225 Düsseldorf Germany (1)
The Hospital for Sick Children (1)
Ulrike Resch, DI. Dr. rer. nat. Medical University of Vienna Center of Physiology and Pharmacology Department of Vascular Biology and Thrombosis Research Schwarzspanierstraße 17/I A- 1090 Vienna, Austria ORCID-ID:0000-0002-8380-9555 (1)

Tags

xref:PubMed:15897466 (1)

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Ca2+ release to lumen from ADP-sensitive phosphoenzyme E1PCa2 without bound K+ of sarcoplasmic reticulum Ca2+-ATPase.

Not available

S-EPMC2992300 | biostudies-literature

Roles of Tyr122-hydrophobic cluster and K+ binding in Ca2+ -releasing process of ADP-insensitive phosphoenzyme of sarcoplasmic reticulum Ca2+ -ATPase.

Not available

S-EPMC2662013 | biostudies-literature

DNA methylation profiling by HELP-seq in Dnmt1+/+ mouse embryonic fibroblasts

DNA methylation and the Polycomb Repression System are epigenetic mechanisms that play important roles in maintaining transcriptional repression. Recent evidence suggests that DNA methylation can attenuate the binding of Polycomb protein components to chromatin and thus plays a role in determining t...

ORGANISM(S): Mus musculus

2013-03-01 | E-GEOD-44757 | biostudies-arrayexpress

The cryo-EM structure of gastric H⁺,K⁺-ATPase with bound BYK99, a high-affinity member of K⁺-competitive, imidazo[1,2-a]pyridine inhibitors.

Not available

S-EPMC5529566 | biostudies-literature

Histone Deacetylases Enhance Ca²⁺-Activated K⁺ Channel K_Ca3.1 Expression in Murine Inflammatory CD4⁺ T Cells.

Not available

S-EPMC6213394 | biostudies-literature

Hydroxyl-Group Identification Using O K-Edge XAFS in Porous Glass Fabricated by Hydrothermal Reaction and Low-Temperature Foaming.

Not available

S-EPMC6803955 | biostudies-literature

Heterodimerization of two pore domain K+ channel TASK1 and TALK2 in living heterologous expression systems.