Swath-proteomics

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Proteomics (768)
Unknown (184)
Genomics (9)
Transcriptomics (4)
Other (3)
Multiomics (1)
Metabolomics (1)

Organisms

Homo sapiens (389)
Mus musculus (132)
Saccharomyces cerevisiae (47)
Escherichia coli (27)
Rattus norvegicus (25)
Bos taurus (13)
Arabidopsis thaliana (9)
Hordeum vulgare (7)
Sus scrofa domesticus (7)
Carassius auratus red var. (2)
Cyprinus carpio (2)
Osmanthus fragrans (2)
allotetraploid Carassius auratus red var. x Cyprinus carpio (2)
Escherichia coli str. K-12 substr. MG1655 (1)
Amaryllidaceae (1)
Capra hircus (1)
Ctenopharyngodon idellus x Elopichthys bambusa (1)
Eupatorium cannabinum (1)
Gymnocypris przewalskii (1)
Hypophthalmichthys molitrix (1)
Hypophthalmichthys nobilis (1)
Iranian hemp witches'-broom phytoplasma (1)
Magallana gigas (1)
Mylopharyngodon piceus (1)
Nicotiana tabacum (1)
Ovis aries (1)
Populus trichocarpa (1)
allotetraploid Cyprinus carpio x Carassius auratus red var. (1)
Rattus rattus (1)
Staphylococcus aureus (1)

Organisms

Rattus norvegicus (2)
Halobacterium salinarum (1)
Zea mays (1)
Homo sapiens (1)

Repository

pride (701)
iProX (21)
PeptideAtlas (20)
MassIVE (12)
ENA (9)
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geo (5)
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GPMDB (2)
MetaboLights (1)

Tissue

Cell culture (137)
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Saliva (7)
Early embryonic cell (6)

Disease

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Disease free (10)
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Not Available (2)
Age related macular degeneration (2)
Amyotrophic lateral sclerosis type 1 (2)
Brain glioblastoma multiforme (2)

Technology Type

Mass Spectrometry (701)
SWATH MS (665)
Shotgun proteomics (366)
Bottom-up proteomics (66)
Data-independent acquisition (60)
Affinity purification coupled with mass spectrometry proteomics (39)
Gel-based experiment (23)
Data-dependent acquisition (19)
SRM/MRM (16)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Top-down proteomics (10)
DiaPASEF (8)
All-ion fragmentation (5)
HDMSE (5)
Mass spectrometry imaging (4)
PAcIFIC (3)
MSE (2)
RNA mass spectrometry (2)
Mass spectrometry (1)

Instrument Platform

LTQ Orbitrap Velos (10)
TripleTOF 5600 (8)
LTQ Orbitrap XL (7)
TripleTOF 6600 (4)
Q Exactive (3)
Instrument (2)
LTQ (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2023 (105)
2022 (101)
2021 (91)
2024 (87)
2025 (77)
2019 (63)
2026 (56)
2020 (50)
2018 (41)
2017 (38)
2013 (21)
2016 (16)
2015 (13)
2014 (3)

UNIPROT ID/AC

14310_ARATH (4)
14332_ARATH (4)
14333_ARATH (4)
14335_ARATH (4)
14337_ARATH (4)
14339_ARATH (4)
1A110_ARATH (4)
1A112_ARATH (4)
2A5A_ARATH (4)
2A5B_ARATH (4)
2A5D_ARATH (4)
2A5G_ARATH (4)
2A5Z_ARATH (4)
2AAA_ARATH (4)
2AAB_ARATH (4)
2AAG_ARATH (4)
2AB2A_ARATH (4)
2AB2B_ARATH (4)
2AB2E_ARATH (4)
2ABB_ARATH (4)
2SS2_ARATH (4)
3702.AT2G25210.1 (4)
3702.AT2G36485.1 (4)
3702.AT3G18270.1 (4)
3702.AT5G08670.1 (4)
3702.AT5G65770.2 (4)
3HID1_ARATH (4)
3HID2_ARATH (4)
3HID3_ARATH (4)
3HIDH_ARATH (4)

CHEBI ID

CHEBI:132546 (1)
CHEBI:15428 (1)
CHEBI:15756 (1)
CHEBI:16010 (1)
CHEBI:16449 (1)
CHEBI:16865 (1)
CHEBI:16995 (1)
CHEBI:17057 (1)
CHEBI:17306 (1)
CHEBI:17724 (1)
CHEBI:17822 (1)
CHEBI:17992 (1)
CHEBI:18183 (1)
CHEBI:22653 (1)
CHEBI:22660 (1)
CHEBI:22958 (1)
CHEBI:24400 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:26271 (1)
CHEBI:26986 (1)
CHEBI:27082 (1)
CHEBI:27266 (1)
CHEBI:28044 (1)
CHEBI:28053 (1)
CHEBI:28757 (1)
CHEBI:28842 (1)
CHEBI:30769 (1)
CHEBI:32816 (1)
CHEBI:33942 (1)

Metabolite Name

2-Butenedioic acid (1)
3-Cyanoalanine (1)
4-Aminobutyric acid (1)
5-Oxoproline (1)
Alanine (1)
Asparagine (1)
Aspartic acid (1)
Cellobiose (1)
Citric acid (1)
Ethanedioic acid (1)
Fructose (1)
Glucopyranose (1)
Glycine (1)
Glycoside (1)
Isoleucine (1)
Leucine (1)
Malic acid (1)
Maltose (1)
Melibiose (1)
N,N-dimethylglycine (1)
Palmitic acid (1)
Phenylalanine (1)
Proline (1)
Propanoic acid, 2-methyl-, 1-(1,1-dimethylethyl)-2-methyl-1,3-propanediyl ester (1)
Pyroglutamic acid (1)
Pyruvic acid (1)
Ribose (1)
Serine (1)
Stearic acid (1)
Sucrose (1)

First Public Date

2025 (3)
2023 (2)
2024 (1)
2021 (1)
2020 (1)
2017 (1)

Modification

0.984 (2)
15.99491 (2)
57.02146 (2)
2x(15)N labeled L-lysine (1)
43.00581 (1)
4x(15)N labeled L-arginine (1)

Release Date

2022 (27)
2021 (24)
2020 (24)
2019 (21)
2023 (18)
2016 (16)
2018 (13)
2017 (11)
2025 (10)
2024 (9)
2015 (5)
2026 (3)
2014 (1)
2013 (1)
2012 (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (16)
School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (10)
Center for Neuroscience and Cell Biology – University of Coimbra (8)
ETH Zurich (6)
Bioplatforms Australia (5)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (4)
The University of Melbourne (4)
The University of Sydney (4)
Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (4)
Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Novara, Italy (3)
Center for Neuroscience and Cell Biology (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (3)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
ETH Zurich Prof. Dr. Ruedi Aebersold Institute of Molecular Systems Biology Head of Department of Biology HPT E 78 Auguste-Piccard-Hof 1 CH-8093 Zurich Switzerland (3)
Institute of Molecular Systems Biology, ETH Zurich (3)
Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (3)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (3)
Laboratory of Mass Spectrometry, Core Facility Laboratories, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland (3)
Monash Institute of Pharmaceutical Sciences, Monash University, Melbourne, Australia (3)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (3)
ProCan®, Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW, Australia. (3)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
University at buffalo, SUNY (3)
1. Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland 2. Faculty of Science, University of Zurich, 8006 Zurich, Switzerland (2)
Abbvie Bioresearch Center (2)
Analytical Chemistry Lab Fondazione Istituto Italiano di Tecnologia Via Morego 30, 16163 Genova Italy (2)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (2)
Australian Proteome Analysis Facility, Macquarie University (2)
Biognosys AG (2)
Biognosys AG, Schlieren, Schweiz (2)

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Ultra-fast proteomics with Scanning SWATH.

Not available

S-EPMC7611254 | biostudies-literature

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.

Not available

S-EPMC6088389 | biostudies-literature

High-throughput proteomics of nanogram-scale samples with Zeno SWATH MS.

Not available

S-EPMC9711518 | biostudies-literature

Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis [RNA-Seq_1]

PRJNA1063645 | ENA

PRJNA1063646 | ENA

The rat sub-total nephrectomy (SNx) is a functional model of chronic kidney disease (CKD), where the main pathological driver is glomerular hypertension. Comprehensive transcriptomics and proteomics analyses on the rat SNx model were performed to identify biomarkers in plasma or urine that correlate...

ORGANISM(S): Rattus norvegicus

2025-01-01 | GSE253008 | GEO