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UnknownAutomatically extracting functionally equivalent proteins from SwissProt.
Not available
S-EPMC2576269 | biostudies-literature
TranscriptomicsTranscriptome analysis of the newly described centipede Eupolybothrus cavernicolus sp.n.
We compiled the transcriptome by extracting mRNA, reverse transcription and Illumina sequencing, followed by assembly and annotation by comparison with public databases (including; Nr, SwissProt and COG). Quantitative data on the transcription abundance of each putative protein sequence is provided ...
ORGANISM(S): Eupolybothrus sp. PS-2013 
2013-10-28 | E-MTAB-1859 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of flowering progress in pitaya
To further explore the molecular mechanisms of flowering regulation in pitaya, we used de novo RNA sequencing-based transcriptomic analysis for four stages of pitaya subjected to light induction. We assembled 68113 unigenes in total, of which 29782 unigenes with functional annotations in the Nr data...
ORGANISM(S): Selenicereus undatus 
2020-05-06 | GSE125083 | GEO
ProteomicsmESC shotgun and positional proteomics based on deep proteome sequence database (derived from RIBOseq data)
Shotgun and positional proteomics study of a mouse embryonic stem cell line. We devised a proteogenomic approach constructing a custom protein sequence search space, built from both SwissProt and RIBO-seq derived translation products, applicable for LC-MSMS spectrum identification. To record the im...
ORGANISM(S): Mus musculus (Mouse) 
2013-02-25 | PXD000124 | Pride
Ribo-seq Shotgun Ribosome profiling Swissprot Mesc 14 N-terminal cofradic 
ProteomicsNCI60 proteome by PCT-SWATH - Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines
We obtained quantitative analysis of the NCI-60 cell panels using pressure cycling technology (PCT) and SWATH-MS. Each cell was analyzed in duplicate. The data were analyzed using a cell line SWATH assay library and OpenSWATH, followed by SWATH-expert refinement.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-07-29 | MSV000085848 | MassIVE
UnknownClustering the annotation space of proteins.
Not available
S-EPMC552314 | biostudies-literature
UnknownProSAS: a database for analyzing alternative splicing in the context of protein structures.
Not available
S-EPMC2238869 | biostudies-literature
UnknownEvolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs.
Not available
S-EPMC3591440 | biostudies-literature
ProteomicsDIA proteomic profiling of psoriasis: pharmacological rescue in an imiquimod-induced mouse model and CRISPR knockout human keratinocytes
This dataset contains quantitative, bottom-up DIA proteomics data generated as part of a larger study entitled "AI-Guided CRISPR Screen Reveals Repurposed Drugs as Topical Psoriasis Therapeutics," and is organized into two complementary sub-studies.Sub-study 1 – Pharmacological Rescue in a Mouse Pso...
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2026-05-21 | PXD071833 | Pride
UnknownBOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria.
Not available
S-EPMC441489 | biostudies-literature
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