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System-wide metabolic homeostasis is crucial for maintaining physiological functions of living organisms. Stable-isotope tracing metabolomics allows to unravel metabolic activity quantitatively by measuring the isotopically labeled metabolites, but has been largely restricted by coverage. Yet, de...

2022-06-16 | MTBLS3322 | MetaboLights

Pinus radiata seedlings, the most widely planted pine species in the world, were exposed to temperatures within a range mimicking future scenarios based on current models of heat increase. The short-term heat response in P. radiata was studied in detail by exploring the metabolo...

2023-08-14 | MTBLS4567 | MetaboLights

While rapid progress has been made to characterize the bacterial and archaeal populations of the rumen microbiome, insight into how they interact with keystone protozoal species remains elusive. Here, we reveal two distinct rumen community types (RCT-A and RCT-B) that are not strongly associated ...

2025-06-11 | MTBLS12283 | MetaboLights

With the global rise in aging populations, the increasing incidence of neurodegenerative diseases underscores concerns about brain health, with pesticides like rotenone, emerging as key environmental hazardous. The precise mechanism by which chronic environmental concentration of rotenone exposur...

2025-01-28 | MTBLS11699 | MetaboLights
Our system recapitulates expected characteristics of the well characterized H3.3 histone variant, and show that we gain additional information by using a kinetic approach. Additionaly, our results on the less-studied MacroH2A2 variant revealed differential dynamic profiles of this M-bM-^@M-^\repress...
ORGANISM(S): Mus musculus 
SUMOylation is a reversible post-translational modification regulating all nuclear processes. Identification of SUMOylation sites by mass spectrometry has been hampered by bulky tryptic fragments, which thus far necessitated the use of mutated SUMO. Here, we present a dataset generated through a SUM...
ORGANISM(S): Homo sapiens (Human) 
2015-06-15 | PXD001798 | Pride
GwAAP: A Genome-wide Amino Acid coding-decoding quantitative Proteomic system was designed in which each protein could be assigned with a distinct code. Using synthetic biology technology, the amino acids codes were coded in N terminal of the corresponding proteins in the genome of yeast (Saccharomy...
ORGANISM(S): Saccharomyces Cerevisiae 
2021-12-22 | PXD023100 |
This dataset consist 960 untargted LC-MS/MS runs of human skin swabs and environmental swabs of human habitats. The data was generated in the context of the System Wide MS course at UC San Diego (Skaggs School of Pharmacy).
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Environmental Samples <bacillariophyta> (ncbitaxon:33858) 
2016-05-03 | MSV000079697 | GNPS
SUMOylation is a reversible post-translational modification regulating all nuclear processes. Identification of SUMOylation sites by mass spectrometry has been hampered by bulky tryptic fragments, which thus far necessitated the use of mutated SUMO. Here, we present a dataset generated through a SUM...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-28 | MSV000080714 | MassIVE
This dataset consist 960 targeted MRM runs of human skin swabs and environmental swabs of human habitats. The data was generated in the context of the System Wide MS course at UC San Diego (Skaggs School of Pharmacy).
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Environmental Samples <bacillariophyta> (ncbitaxon:33858) 
2016-05-03 | MSV000079699 | GNPS
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