Tang F F - OmicsDI

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Unknown (11370)
Proteomics (190)
Transcriptomics (132)
Metabolomics (51)
Genomics (37)
Multiomics (13)
Models (1)

Organisms

Homo sapiens (120)
Mus musculus (55)
Arabidopsis thaliana (11)
Saccharomyces cerevisiae (7)
Drosophila melanogaster (5)
Triticum aestivum (5)
Rattus norvegicus (4)
Macaca mulatta (2)
Rattus rattus (2)
Staphylococcus aureus (2)
Pseudomonas aeruginosa M18 (1)
Brassica oleracea (1)
Arachis hypogaea (1)
Panicum virgatum (1)
Callithrix jacchus (1)
Pan troglodytes (1)
Drosophila simulans (1)
Macaca fascicularis (1)
Medicago truncatula (1)
Zea mays (1)
Oryza sativa (1)
Glycine max (1)
Amaryllidaceae (1)
Moschus berezovskii (1)
Blastobotrys adeninivorans (1)
Brucella suis bv. 1 str. S2 (1)
Escherichia coli RS218 (1)
137245 (1)
Malus domestica (1)
Capra hircus (1)

Organisms

Dendroctonus ponderosae (2)
Homo sapiens (1)

Repository

biostudies-arrayexpress (154)
pride (111)
iProX (52)
MetaboLights (51)
PeptideAtlas (15)
EGA (12)
MassIVE (10)
ENA (4)
BioModels (1)
PAXDB (1)

Tissue

Cell culture (24)
Brain (12)
Others (11)
Liver (9)
Epithelial cell (7)
Blood plasma (5)
Heart (4)
Whole body (4)
Plasma Non-glyco (3)
Smooth muscle cell (3)
Macrophage (3)
HeLa cell (3)
Primary cell (3)
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Blood (3)
Keratinocyte (2)
Skin (2)
Embryo (2)
Testis (2)
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Leaf (2)
Permanent cell line cell (2)
Peg cell (1)
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Appressorium (1)
Coelomic epithelium (1)
Raphe nuclei (1)
Synovia (1)

Disease

Breast cancer (4)
Disease free (3)
Colon cancer (2)
Beta thalassemia (1)
Laryngeal squamous cell carcinoma (1)
Adult hepatocellular carcinoma (1)
Liver inflammation (1)
Cerebrovascular disease (1)
Mental depression (1)
Osteosarcoma (1)
Liver disease (1)
Parkinson's disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (111)
Shotgun proteomics (46)
Mass spectrometry (40)
Data-dependent acquisition (19)
Bottom-up proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (11)
NMR spectroscopy (8)
Gel-based experiment (6)
Mass spectrometry assay (4)
SWATH MS (4)
SRM/MRM (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (3)
All-ion fragmentation (2)
Data-independent acquisition (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Metaproteomics (1)
Proteogenomics (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (21)
Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - positive - hilic (7)
Nuclear Magnetic Resonance (NMR) - (6)
Illumina HiSeq 2000 (4)
Orbitrap Fusion Lumos (3)
Q Exactive HF (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina Genome Analyzer IIx (2)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (2)
Liquid Chromatography MS - negative (2)
Bruker (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - positive (2)
Illumina HiSeq 2000 platform (1)
Illumina HiSeq 4000 (1)
LTQ XL (1)
Q Exactive HF-X (1)
Orbitrap Fusion (1)
Q Exactive (1)
Quattro micro API (Waters) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Trace DSQ quadrupole (Thermo Electron) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)

Publication Date

2023 (36)
2022 (33)
2025 (33)
2012 (32)
2014 (30)
2021 (25)
2015 (25)
2024 (24)
2011 (18)
2010 (17)
2026 (16)
2020 (16)
2016 (15)
2013 (15)
2019 (10)
2018 (8)
2017 (7)
2009 (5)
2008 (3)
2007 (3)
2005 (2)
2006 (2)

UNIPROT ID/AC

NAP1_YEAST (1)
GGC1_YEAST (1)
CBK1_YEAST (1)
MCFS1_YEAST (1)
ARI1_YEAST (1)
HCH1_YEAST (1)
YKT6_YEAST (1)
H3_YEAST (1)
OYE2_YEAST (1)
ACON_YEAST (1)
TPS2_YEAST (1)
YIR7_YEAST (1)
DRS1_YEAST (1)
GATB_YEAST (1)
PGM3_YEAST (1)
DCP2_YEAST (1)
THTR_YEAST (1)
RPA2_YEAST (1)
DUG2_YEAST (1)
NUP60_YEAST (1)
PSA6_YEAST (1)
DHYS_YEAST (1)
SF3B1_YEAST (1)
TYW1_YEAST (1)
MS116_YEAST (1)
ARMT1_YEAST (1)
4932.YMR051C (1)
EIF3J_YEAST (1)
SOK1_YEAST (1)
END3_YEAST (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:15428 (18)
CHEBI:15354 (17)
CHEBI:16704 (16)
CHEBI:17596 (16)
CHEBI:17368 (16)
CHEBI:30769 (15)
CHEBI:15891 (14)
CHEBI:17750 (14)
CHEBI:28044 (14)
CHEBI:16467 (13)
CHEBI:17351 (13)
CHEBI:16359 (13)
CHEBI:16449 (13)
CHEBI:15741 (13)
CHEBI:6650 (13)
CHEBI:16737 (13)
CHEBI:16708 (13)
CHEBI:25017 (13)
CHEBI:17053 (12)
CHEBI:15756 (12)
CHEBI:17568 (12)
CHEBI:16750 (12)
CHEBI:27897 (12)
CHEBI:16919 (12)
CHEBI:27266 (12)
CHEBI:17154 (12)
CHEBI:18183 (11)
CHEBI:17992 (11)
CHEBI:16414 (11)
CHEBI:17015 (11)

Metabolite Name

Hypoxanthine (12)
Glycine (12)
Choline (11)
Phenylalanine (10)
Taurine (10)
Uridine (10)
Valine (9)
Leucine (9)
Adenine (9)
Alanine (8)
Linoleic acid (8)
Uracil (8)
Creatinine (8)
L-Arginine (8)
Inosine (8)
Glutamate (7)
Histidine (7)
Deoxycholic acid (7)
Citric acid (7)
Lysine (7)
Malic acid (7)
Tyrosine (7)
Proline (7)
Isoleucine (7)
Glutamine (7)
Glucose (7)
Pyruvic acid (6)
L-Tyrosine (6)
Methionine (6)
Cholic acid (6)

First Public Date

2021 (2)
2013 (2)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Key Laboratory of Tropical Marine Bio-resources and Ecology,South China Sea Institute of Oceanology, Chinese Academy of Sciences (3)
Memorial Sloan Kettering Cancer Center (3)
Xiamen University (3)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Ji’nan, 250100, Shandong, China (2)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (2)
Central South University (2)
South China Sea Institute of Oceanology, Chinese Academy of Sciences (2)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, Hubei,China (2)
Cyrus Tang Medical Institute, Soochow University, Suzhou 215123, China. (2)
Department of Radiation Oncology, Nanfang Hospital, Southern Medical University (1)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (1)
Precision Research Center for Refractory Diseases, Shanghai General Hospital,Shanghai Jiao Tong University School of Medicine (1)
University of Texas Medical Branch School of Medicine Department of Pharmacology and Toxicology (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)
Novo Nordisk A/S Translational Technologies (Dept. 6905) Novo Nordisk Park 1 DK-2760 Måløv Denmark (1)
Anhui University of Traditional Chinese Medicine (1)
University/Hospital: the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) Street Name & Number: No. 1017, North of Dongmen Road, Shenzhen City, Guangdong Province 518020, China (1)
The First Affiliated Hospital of Southern University of Science and Technology, the Second Clinical Medical College of Jinan University, Shenzhen People’s Hospital, Shenzhen 518020, China (1)
CAS Key Laboratory of Genomics and Precision Medicine, Beijing Institute of Genomics, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing, China (1)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (1)
Wang Yiguang lab (1)
Institute of Nephrology and Blood Purification, The First Affiliated Hospital of Jinan University, Jinan University, Guangzhou 510632, China (1)
Core facility for mass spectrometry and proteomics, ZMBH, University Heidelberg, IM Neuenheimer Feld 282, 69120 Heidelberg, Germany (1)
Department of Immunology & National Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (CAMS) & Peking Union Medical College, Beijing (1)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing, China (1)
Nephrology Department of Guilin No.924 Hospital, Guangxi Key Laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research; Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) (1)
Environmental Toxicology Graduate Program, and Department of Chemistry, University of California Riverside, Riverside, CA 92521-0403 (1)
Xiangya Hospital & Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China (1)

IsPrivate

False (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (58)
RNA-seq of coding RNA (50)
Methylation profiling by high throughput sequencing (11)
ChIP-seq (10)
Unknown experiment type (6)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (3)
Transcription profiling by tiling array (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (1689)
2022 (1591)
2023 (1351)
2024 (1298)
2021 (1232)
2020 (853)
2019 (643)
2018 (556)
2017 (463)
2016 (391)
2015 (308)
2014 (276)
2026 (238)
2013 (148)
2012 (139)
2011 (108)
2010 (83)
2009 (56)
2008 (29)
2007 (22)
2005 (12)
2006 (12)
2004 (12)
2003 (4)
2002 (4)
1998 (2)
1997 (2)
2001 (1)

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Tracing pluripotency of human early embryos and embryonic stem cells by single cell RNA-seq

Find the casual relationship between gene expression network and cellular phenotype at single cell resolution. We collected donated human pre-implatation embryos, and the embryonic stem cells derived from them, isolate individual cells, prepared single cell cDNAs, and sequenced them by HiSeq2000. Th...

ORGANISM(S): Homo sapiens

2013-08-10 | E-GEOD-36552 | biostudies-arrayexpress

Expression data from Shp2f/f and SCSKO mice testis

The ability of male reproduction is seriously dependent on Sertoli cells. However, the mechanisms governing the functional integrity of Sertoli cells remained largely unexplored. Tyrosine phosphatase protein Shp2 is expressed in germ, Leydig and Sertoli cells of mice testes. But the physiological ro...

ORGANISM(S): Mus musculus

2015-05-14 | E-GEOD-68829 | biostudies-arrayexpress

Identification of the Short Neuropeptide F and Short Neuropeptide F Receptor Genes and Their Roles of Food Intake in Dendroctonus armandi.

Not available

S-EPMC8469826 | biostudies-literature

Quantitative Proteomics Reveals a Role for Epigenetic Reprogramming During Human Monocyte Differentiation

The data submitted is for the proteomics data published in the paper: Quantitative proteomics reveals a role for epigenetic reprogramming during human monocyte differentiation D Nicholas, H Tang, Q Zhang, J Rudra, F Xu, W Langridge, K Zhang Molecular & Cellular Proteomics 14 (1), 15-29.

ORGANISM(S): Homo sapiens (Human)

2024-11-27 | PXD058308 | Pride

Roles of F-box proteins in cancer.

Not available

S-EPMC4306233 | biostudies-literature

Cloning and Expression of the Neuropeptide F and Neuropeptide F Receptor Genes and Their Regulation of Food Intake in the Chinese White Pine Beetle Dendroctonus armandi.

Not available

S-EPMC8249871 | biostudies-literature

e323eb9f-9908-4768-9836-ff7eed9ef63a - samples

This dataset contains the FASTQ files for a portion of the samples in Tang F. et al. Ã¢Â€ÂœChromatin accessibility profiles of castration-resistant prostate cancers reveal novel subtypes and therapeutic vulnerabilitiesÃ¢Â€Â published in Science. It contains 51 samples sequenced with Illumina HiSeq ...

EGAD00001008598 | EGA

Comprehensive diagnosis of PCDD/F emission from three hazardous waste incinerators.

Not available

S-EPMC6083712 | biostudies-literature

Haustoria - arsenals during the interaction between wheat and Puccinia striiformis f. sp. tritici.

Not available

S-EPMC6913192 | biostudies-literature

Ultrahigh (19)F Loaded Cu1.75S Nanoprobes for Simultaneous (19)F Magnetic Resonance Imaging and Photothermal Therapy.

Not available

S-EPMC5218586 | biostudies-literature

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11781 Results

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