Taylor P P - OmicsDI

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Unknown (8580)
Transcriptomics (385)
Genomics (205)
Proteomics (151)
Metabolomics (43)
Genomic (15)
Models (5)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (453)
Mus musculus (133)
Rattus norvegicus (9)
Solanum tuberosum (7)
Danio rerio (7)
Klebsiella pneumoniae (6)
Arabidopsis thaliana (6)
Staphylococcus aureus (5)
Paramecium tetraurelia (4)
Caenorhabditis elegans (4)
Saccharomyces cerevisiae (4)
Bos taurus (3)
Escherichia coli (3)
Populus trichocarpa x Populus deltoides (2)
Macaca mulatta (2)
Streptococcus pyogenes (2)
Zea mays (2)
Campylobacter jejuni (2)
Oryza sativa (2)
Vibrio cholerae (2)
Drosophila melanogaster (2)
Adenolobus pechuelii (1)
Vibrio cholerae O395 (1)
Gambusia holbrooki (1)
Bifidobacterium animalis subsp. lactis Bl-04 (1)
Saccharomyces cerevisiae BY4741 (1)
Shigella sonnei (1)
Populus alba (1)
Naegleria gruberi (1)
Picea sitchensis (1)

Organisms

Homo sapiens (3)
uncultured prokaryote (1)
Papio anubis (1)
Vibrio cholerae (1)
Plasmodium falciparum (1)
Apis mellifera (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (413)
EGA (163)
pride (122)
MetaboLights (42)
MassIVE (25)
ENA (16)
dbGaP (15)
BioModels (4)
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FAIRDOMHub (1)
GNPS (1)
GPMDB (1)
PeptideAtlas (1)

Tissue

Cell culture (33)
Brain (10)
Fibroblast (9)
Epithelial cell (8)
Permanent cell line cell (7)
Whole body (7)
Kidney (6)
Lung (6)
Heart (5)
Liver (5)
B cell (3)
Blood (3)
Blood cell (3)
Blood plasma (3)
Dental plaque (3)
Blood serum (2)
Cardiac muscle tissue of ventricle (2)
Colon (2)
Colon epithelial cell (2)
Early embryonic cell (2)
Prostate gland (2)
Skeletal muscle (2)
Spleen (2)
Testis (2)
Adrenal gland (1)
B-lymphocyte (1)
Blood platelet (1)
Bone marrow (1)
Breast (1)
HeLa cell (1)

Disease

Brain cancer (4)
Breast cancer (3)
Cardiovascular system disease (3)
Colon cancer (3)
Parkinson's disease (3)
Prostate adenocarcinoma (3)
Mitochondrial complex I deficiency (2)
Non-small cell lung carcinoma (2)
Phyllodes tumor (1)
Post-stasis (1)
Infiltrating ductal carcinoma (1)
Colon cancer metastasis (1)
Unstable atherosclerotic plaque region (1)
Normal (1)
Not Available (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Caffey disease (1)
Cervix carcinoma (1)
Childhood medulloblastoma (1)
Filariasis (1)
Hepatocellular carcinoma (1)
Lung benign neoplasm (1)
Lung cancer (1)
Lung non-squamous non-small cell carcinoma (1)
Lymphoma (1)
Malaria (1)
Medulloblastoma (1)
Melanoma (1)
Mitochondrial metabolism disease (1)

Technology Type

Mass Spectrometry (122)
Shotgun proteomics (58)
Mass spectrometry (33)
Bottom-up proteomics (32)
Affinity purification coupled with mass spectrometry proteomics (23)
Data-dependent acquisition (16)
Gel-based experiment (9)
Illumina 15K (8)
Data-independent acquisition (8)
Mass spectrometry assay (6)
NMR spectroscopy (6)
Illumina HiSeq 2000 (5)
SWATH MS (4)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix OncoScan FFPE Express (1)
Complete Genomics, unspecified (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
Illumina OncoArray (1)
DiaPASEF (1)
HDMSE (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (12)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (6)
NextSeq 500 (4)
Orbitrap Fusion Lumos (3)
GenePix 4000B [Axon Instruments] (2)
Illumina NovaSeq X (2)
Q Exactive GC-MS Orbitrap (Thermo Scientific) (2)
Illumina Hybridisation Oven (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
10x machine (1)
Illumina Human-12 v1 Expreesion BeadChip (1)
G2505B scanner (Agilent) (1)
Illumina iScan (1)
C1 Fluidigm (1)
Illumina NextSeq500 (1)
Agilent G2505B Scanner (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
NanoDrop (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)

Publication Date

2010 (67)
2012 (63)
2013 (57)
2015 (51)
2014 (49)
2011 (47)
2025 (32)
2024 (28)
2026 (26)
2023 (23)
2021 (23)
2020 (23)
2022 (22)
2016 (22)
2019 (15)
2017 (14)
2018 (12)
2009 (11)
2006 (8)
2008 (7)
2007 (5)
2004 (3)
2005 (2)

CHEBI ID

CHEBI:15428 (11)
CHEBI:30769 (11)
CHEBI:15603 (10)
CHEBI:16643 (10)
CHEBI:16977 (10)
CHEBI:17191 (10)
CHEBI:17295 (10)
CHEBI:17895 (10)
CHEBI:18019 (10)
CHEBI:32816 (10)
CHEBI:6650 (10)
CHEBI:15741 (9)
CHEBI:16857 (9)
CHEBI:17115 (9)
CHEBI:17154 (9)
CHEBI:30915 (9)
CHEBI:15756 (8)
CHEBI:15971 (8)
CHEBI:16335 (8)
CHEBI:16414 (8)
CHEBI:16704 (8)
CHEBI:17196 (8)
CHEBI:17203 (8)
CHEBI:17268 (8)
CHEBI:17306 (8)
CHEBI:17568 (8)
CHEBI:18012 (8)
CHEBI:15344 (7)
CHEBI:15351 (7)
CHEBI:15824 (7)

Metabolite Name

L-Phenylalanine (8)
Acetoacetic acid (7)
L-Alanine (7)
L-Isoleucine (7)
L-Methionine (7)
L-Proline (7)
L-Tyrosine (7)
L-Valine (7)
Succinic acid (7)
Uracil (7)
Adenine (6)
Adenosine (6)
Citric acid (6)
D-Glucose (6)
FAD (6)
Guanine (6)
Hypoxanthine (6)
L-Leucine (6)
L-Threonine (6)
Maleic acid (6)
Malic acid (6)
Ornithine (6)
Palmitic acid (6)
Thymine (6)
Uridine (6)
3-Hydroxyisovaleric acid (5)
3-Phosphoglyceric acid (5)
Betaine (5)
Capric acid (5)
Caproic acid (5)

First Public Date

2026 (7)
2020 (2)
2014 (2)
2025 (1)
2023 (1)
2021 (1)
2019 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (3)
Other (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125 Berlin, Germany Department of Chemistry, Humboldt Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany (2)
Liverpool John Moores University (2)
Max Planck Institute for the Science of Human History (2)
Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
Sequence database group (2)
The Hospital For Sick Children, Program in Molecular Structure and Function, Princess Margaret Cancer Centre, and Department of Molecular Genetics, University of Toronto. Peter Gilgan Centre for Research and Learning, 686 Bay Street, Toronto M5G 0A4, Canada (2)
The Hospital for Sick Children (2)
1Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia 2Murdoch Children’s Research Institute, Melbourne, VIC 3052, Australia 3Victorian Clinical Genetics Services, Murdoch Children’s Research Institute, Melbourne, VIC, 3052, Australia (1)
Arvinas Operations, Inc., 5 Science Park, 395 Winchester Avenue, New Haven, Connecticut 06511 United States (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Associate Professor in Molecular Reproductive Biology, Discovery and Translational Sciences Department, Leeds Institute of Cardiovascular and Metabolic Medicine (LICAMM), Faculty of Medicine and Health Sciences, University of Leeds, UK (1)
Australian National University, ACT, Australia (1)
Boston Childrens Hospital Harvard Medical School (1)
Cancer Research UK Cambridge Institute, Li Ka Shing Centre , University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK (1)
Chemical Biology Department, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Strasse 10, 13125 Berlin, Germany. Department of Chemistry, Humboldt Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany (1)
Children's Hospital of Philadelphia (1)
Chromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, NW1 1AT, UK. (1)
Colorado Center for Reproductive Medicine (1)
Columbia University, Department of Biochemistry and Molecular Biophysics, USA (1)
Department of Anatomy Cell Biology & Physiology Indiana University School of Medicine. Neurosciences Research Building 320 W. 15th Street, NB-214G Indianapolis, IN 46202 (1)
Department of Anesthesiology and Critical Care Medicine Children’s Hospital of Philadelphia University of Pennsylvania Philadelphia, Pennsylvania (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville Victoria 3052, Australia (1)
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge MA, 02139, USA; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge MA, 02139, USA; Center for Precision Cancer Medicine, Massachusetts Institute of Technology, Cambridge MA, 02139, USA (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB21EW, United Kingdom (1)
Department of Infection Biology Institute of Infection & Global Health University of Liverpool Liverpool Science Park IC2 146 Brownlow Hill Liverpool L3 5RF UK (1)

IsPrivate

False (4)

Submitter Keywords

Immuno-oncology (1)

Classification

protozoa (1)
bacteria (1)

Modification

Not available (2)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (263)
RNA-seq of coding RNA (40)
ChIP-seq (23)
Comparative genomic hybridization by array (21)
Methylation profiling by array (19)
Unknown experiment type (11)
Transcription profiling by tiling array (6)
Other (5)
RNA-seq of total RNA (5)
Genotyping by array (4)
DNA-seq (3)
ChIP-chip by tiling array (2)
Transcription profiling by RT-PCR (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
Cell line - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Proteomic profiling by mass spectrometer (1)
ATAC-seq (1)

Release Date

2022 (881)
2021 (878)
2023 (855)
2025 (774)
2024 (735)
2020 (629)
2019 (574)
2018 (525)
2017 (457)
2015 (435)
2016 (399)
2014 (337)
2013 (295)
2012 (287)
2011 (229)
2010 (197)
2009 (135)
2026 (117)
2008 (98)
2007 (53)
2006 (26)
2005 (22)
2003 (15)
2004 (13)
2001 (8)
1999 (7)
2000 (6)
2002 (2)
1998 (1)
1992 (1)

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Dynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient

AIM: Low-molecular-weight organic substances (LMWOSs) are at the nexus between micro-organisms, plant roots, detritus and the soil mineral matrix. The nominal oxidation state of carbon (NOSC) has been suggested as a potential parameter for modelling microbial uptake rates of LMWO...

2023-08-14 | MTBLS3558 | MetaboLights

A Biobehavioral Validation of the Taylor Aggression Paradigm in Female Adolescents.

Not available

S-EPMC6504877 | biostudies-literature

Identification of interfaces involved in weak interactions with application to F-actin-aldolase rafts.

Not available

S-EPMC5820182 | biostudies-literature

Radiometric 81Kr dating identifies 120,000-year-old ice at Taylor Glacier, Antarctica.

Not available

S-EPMC4024921 | biostudies-literature

A highly potent bi-thiazole inhibitor of LOX rewires collagen architecture and enhances chemoresponse in triple-negative breast cancer

Raw proteomic files Metin C, Saatci O, Rezaeian A-H, Rao CN, Beneker C, Taylor H, Pederson B, Chatzistamou I, Buckley B, Lessner S, Angel P, McInnes C, Sahin O. A highly potent bi-thiazole inhibitor of LOX rewires collagen architecture and enhances chemoresponse in triple-negative breast cancer. Ce...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-05-16 | MSV000094776 | MassIVE

ipDMR: identification of differentially methylated regions with interval P-values.

Not available

S-EPMC8248314 | biostudies-literature

High-Speed Electrospinning of Ethyl Cellulose Nanofibers via Taylor Cone Optimization.

Not available

S-EPMC11519837 | biostudies-literature

Cell-autonomous regulation of Mu-opioid receptor recycling by substance P.

Not available

S-EPMC4494997 | biostudies-literature

Neuropeptide Substance P Enhances Skin Wound Healing In Vitro and In Vivo under Hypoxia.