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Unknown (137)
Transcriptomics (57)
Genomics (10)
Proteomics (7)
Metabolomics (1)

Organisms

Homo sapiens (40)
Mus musculus (27)
Populus euphratica (2)
Macaca mulatta (1)
Anopheles gambiae (1)
mixed sample (1)
Aedes aegypti (1)
Sus scrofa (1)
Arabidopsis thaliana (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (66)
pride (7)
geo (1)
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Tissue

Cell culture (4)
Epithelial cell (3)
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Permanent cell line cell (1)

Disease

Colorectal adenocarcinoma (1)
Breast cancer (1)
Hypomyelinating leukodystrophy 7 with or without oligodontia and-or hypogonadotropic hypogonadism (1)

Technology Type

Mass Spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (3)
Shotgun proteomics (3)
Mass spectrometry (1)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (16)
Illumina NovaSeq 6000 (13)
Illumina HiSeq 2500 (12)
Illumina HiSeq 2000 (7)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
Agilent Tapestation 4200 (1)
Single nuclei were captured using the 10x Genomics Chromium Controller. (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Bioanalyzer High Sensitivity DNA Analysis (Agilent) (1)
10x genomics multiome kit (1)
Leica Microscope (1)
Bio-Rad CFX96 Real-time System (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
MACS (1)
10X Genomics Chromium (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
Becton Dickinson INFLUX (1)
Fluidigm C1 (1)
BD Influx (1)
Illumina NovaSeq X (1)
None (1)
HiSeq X Ten (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2020 (12)
2017 (8)
2022 (7)
2018 (7)
2012 (6)
2024 (5)
2016 (4)
2014 (4)
2023 (3)
2021 (3)
2019 (3)
2026 (2)
2015 (2)
2025 (2)
2013 (1)
2011 (1)
2010 (1)
2009 (1)
2008 (1)
2005 (1)
2004 (1)

CHEBI ID

CHEBI:10022 (1)
CHEBI:10136 (1)
CHEBI:107239 (1)
CHEBI:115196 (1)
CHEBI:1217 (1)
CHEBI:122083 (1)
CHEBI:131512 (1)
CHEBI:132121 (1)
CHEBI:133341 (1)
CHEBI:133941 (1)
CHEBI:134304 (1)
CHEBI:134745 (1)
CHEBI:135035 (1)
CHEBI:135110 (1)
CHEBI:135234 (1)
CHEBI:135935 (1)
CHEBI:138402 (1)
CHEBI:138794 (1)
CHEBI:138866 (1)
CHEBI:139416 (1)
CHEBI:139445 (1)
CHEBI:140765 (1)
CHEBI:142219 (1)
CHEBI:144069 (1)
CHEBI:144319 (1)
CHEBI:15350 (1)
CHEBI:15354 (1)
CHEBI:15733 (1)
CHEBI:15756 (1)
CHEBI:15773 (1)

Metabolite Name

(15Z)-9,12,13-Trihydroxy-15-octadecenoic acid (1)
(3-Methyl-3-oxetanyl)methyl 4-methylbenzenesulfonate (1)
(3S,5R,10R,12S,14S,15R,16R)-3,5,10,14,15-Pentahydroxy-12,16-dimethyl-2-icosanone (1)
(R)-2-hydroxystearic acid (1)
1,2-Dithiocane-3,8-diol (1)
1,4-Bis[pentachloroallyl]-2,5-dichlorobenzene (1)
1-(2-{[4,6-Di(1-piperidinyl)-1,3,5-triazin-2-yl]oxy}ethyl)-3-phenylurea (1)
1-(4-Amino-1,2,5-oxadiazol-3-yl)-1,2-triazadien-2-ium (1)
1-Chloro-4-iodobutane (1)
1-Oxo-1,2,4-butanetricarboxylic acid (1)
1-Propanesulfonothioate (1)
1-S-Hexyl-1-thiopentitol (1)
1-[3,5-Bis(benzyloxy)phenyl]acetone (1)
12H-Benzo[b]thioxanthen-12-one (1)
16-Hydroxy-hexadecanoic acid (1)
2,3-Dicyano-6-nitroquinoxaline (1)
2-(8-Hydroxy-4a,8-dimethyldecahydro-2-naphthalenyl)acrylic acid (1)
2-({3-Acetamido-5-[acetyl(methyl)amino]-2,4,6-triiodobenzoyl}amino)-2-deoxyhexopyranose (1)
2-Methyl-2-propanyl (2R,3S)-3-{benzyl[(1R)-1-phenylethyl]amino}-2-(cyanomethyl)-3-[2-(diallylamino)phenyl]propanoate (1)
2-Methyl-4,6-Dinitrophenol (1)
2-Phenyl-2-[4-(trifluoromethyl)anilino]acetonitrile (1)
2-Phosphinobenzenethiol (1)
2-carboxy-2,5-dihydro-5-oxo-2-furanacetic acid (1)
3,4-Dicyanofuroxan (1)
3-(1,3-Dioxo-1,3-dihydro-isoindol-2-ylmethyl)-benzoic acid (1)
3-(3-Chlorophenyl)-5-phenyl-1H-1,2,4-triazole (1)
3-Hydroxycinnamic acid (1)
3-Hydroxyphenylacetic acid (1)
3-O-Ethylascorbic acid (1)
3-butene-1,2,3-tricarboxylic acid (1)

First Public Date

2014 (1)

Study type

RNA-seq of coding RNA from single cells (29)
RNA-seq of coding RNA (10)
ChIP-seq (9)
Transcription profiling by array (6)
Baseline (2)
Human - Single-cell sequencing (2)
Single nucleus RNA sequencing (2)
Differential (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2020 (24)
2024 (22)
2021 (20)
2022 (19)
2019 (16)
2017 (16)
2023 (14)
2018 (13)
2025 (13)
2026 (7)
2012 (7)
2016 (6)
2014 (6)
2015 (4)
2009 (4)
2011 (3)
2008 (3)
2010 (2)
2013 (1)
2005 (1)
2004 (1)
2001 (1)

Lab affiliation

Institute for Cardiovascular Physiology, Faculty of Medicine, Goethe-University; Frankfurt am Main, Germany (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands. (1)
Gene Regulation, Stem Cells and Cancer Program Centre de Regulació Genòmica (CRG) The Barcelona Institute of Science and Technology PRBB Dr. Aiguader 88 E-08003 Barcelona Spain Tlf +34 93 316 0119 Fax +34 93 316 0099 e-mail: miguel.beato@crg.eu Secretary: Gemma Perez Tlf +34 93 316 0165 e-mail: gemma.perez@crg.eu www.crg.eu/4dgenome (1)
Junior Group leader Vascular Research Centre, Medicine Faculty Goethe-Universität, Theodor-Stern-Kai 7 60590 Frankfurt am Main, Germany (1)
Translational Proteomics Laboratory, Institut de recherches cliniques de Montréal (IRCM), Québec, Montréal, Canada. Departement of Biochemistry and Molecular Medicine, Université de Montréal, Québec, Montréal, Canada. (Laboratory Director) (1)

Tags

xref:PubMed:22561152 (1)

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Single-cell and single-nucleus RNAseq of the human and mouse skeletal muscle across age

This study aims to characterize the diversity of cell types in human skeletal muscle across age using two complementary technologies: single-cell and single-nucleus sequencing, which provide a comprehensive coverage of cell types in the muscle. We leveraged the aforementioned datasets to study chang...

ORGANISM(S): Mus musculus

2024-03-07 | E-MTAB-13874 | biostudies-arrayexpress

Evolution of oligomeric state through allosteric pathways that mimic ligand binding.

Not available

S-EPMC4337988 | biostudies-literature

Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohn’s disease

In this study, we performed single-cell transcriptional profiling of human embryonic and fetal gut samples obtained from 9 human embryos spanning ages 6-10 PCW and three regions (duo-jejunum, ileum and colon). Additionally, we profile mucosal biopsies from the terminal ileum of healthy children aged...

ORGANISM(S): Homo sapiens

2020-12-22 | E-MTAB-8901 | biostudies-arrayexpress

Th single cell RNA-Seq

Th2 cells regulate helminth infections, allergic disorders, tumor immunity and pregnancy by secreting various cytokines. It is likely that there are undiscovered Th2-signaling molecules. While steroids are known to be immunoregulators, de novo steroid production from immune cells has not been previo...

ORGANISM(S): Mus musculus

2014-04-25 | E-MTAB-2512 | biostudies-arrayexpress

Asymmetric synthesis of propargylamines as amino acid surrogates in peptidomimetics.

Not available

S-EPMC5704752 | biostudies-literature

Evaluation and Effectiveness of a Two-Day Dementia Training Program for Hospital Staff Working in an Emergency Department.

Not available

S-EPMC8764588 | biostudies-literature

Rapid post-eruptive maturation of porcine enamel.

Not available

S-EPMC9979084 | biostudies-literature

Patterns of evolutionary constraints on genes in humans.