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MetabolomicsGlobal ocean lipidomes show a universal relationship between temperature and lipid unsaturation

Global-scale surveys of plankton communities using “omics” techniques have revolutionized our understanding of the ocean. Lipidomics has demonstrated the potential to add further essential insights on ocean ecosystem function but has yet to be applied on a global scale. We analyzed 930 lipid samp...

2021-11-08 | MTBLS2838 | MetaboLights
Metabolomics13C metabolomics reveals widespread change in carbon fate during coral bleaching
INTRODUCTION: Rising seawater temperatures are threatening the persistence of coral reefs; where above critical thresholds, thermal stress results in a breakdown of the coral-dinoflagellate symbiosis and the loss of algal symbionts (coral bleaching). As symbiont-derived organic products typically fo...
2018-12-04 | MTBLS538 | MetaboLights
MetabolomicsDynamic change of IDO1 activity predicts survival in patients with unresectable stage III NSCLC and chemoradiotherapy

OBJECTIVES: High activity of Indoleamine 2,3-dioxygenase1 (IDO1) in lung cancer patients converts tryptophan (Trp), which is the essential amino acid for T cell metabolism, to kynurenine (Kyn) and consequently suppresses anti-tumor immune responses. We aimed to track the dynamics...

2022-08-05 | MTBLS5267 | MetaboLights
MetabolomicsProteome allocations change linearly with the specific growth rate of Saccharomyces cerevisiae under glucose limitation

Saccharomyces cerevisiae is a widely used cell factory; therefore, it is important to understand how it organizes key functional parts when cultured under different conditions. Here, we perform a multiomics analysis of S. cerevisiae by culturing the strain with a wide range of s...

2022-08-31 | MTBLS697 | MetaboLights
MetabolomicsMetabolites change reveal insights into the heartwood color formation mechanism of Dalbergia odorifera

Dalbergia odorifera T. Chen, an indigenous species in Hainan Island, China, had high economic and cultural values. Its sapwood was light yellow, while, heartwood was rich in colors of red, yellow, orange and black. The colorful oily deposits were found in the vessels, fibers and par...

2025-08-14 | MTBLS12857 | MetaboLights
TranscriptomicsMeasurement of temperature affects on Arabidopsis transcription and decay rates
The goal of this study is to measure Arabidopsis mRNA transcription and mRNA decay rates genome wide at two temperatures, and thus to calculate the temperature coefficient of both processes. Sensing and response to ambient temperature is important for controlling growth and development of many organ...
ORGANISM(S): Arabidopsis thaliana 
2013-12-07 | E-GEOD-53071 | biostudies-arrayexpress
ModelsSzymanska2009 - Mathematical modeling of heat shock protein synthesis in response to temperature change
This is a mathematical model of heat shock protein synthesis induced by an external temperature stimulus. The model consists of a system of nine nonlinear ordinary differential equations describing the temporal evolution of key variables involved in the regulation of HSP synthesis.
2024-09-02 | BIOMD0000000896 | BioModels
MetabolomicsFecal microbiota transplantation treatment maintains post antibiotics gut function by change the gut microbiome and fecal metabolome to reduce gut inflammation and oxidative stress in nile tilapia (Oreochromis niloticus)
The imbalance of intestinal flora can affect the immune function and structural integrity of the intestinal barrier, leading to the colonization and reproduction of opportunistic pathogenic bacteria in the intestine to become the dominant flora, eventually inducing enteritis. This study aimed to inv...
2024-03-26 | MTBLS9451 | MetaboLights
ModelsGould2013 - Temperature Sensitive Circadian Clock
Gould2011 - Temperature Sensitive Circadian Clock This model is a temperature sensitive version of Pokhilko et al.  2010 (PMID: 20865009), which is BIOMD0000000273 in BioModels. This model is described in the article: Network balance via CRY signalling controls the Arabidopsis circa...
2024-09-02 | BIOMD0000000564 | BioModels
TranscriptomicsTemperature-dependent transcriptional response under anaerobic C and N limitations in Yeast
The global transcriptional response of Saccharomyces cerevisiae was investigated in low temperature chemostat cultures grown in carbon or nitrogen limitation. During steady state chemostats, the growth rates and in vivo fluxes were kept constant however the growth-limiting nutrient was significantly...
ORGANISM(S): Saccharomyces cerevisiae 
2007-01-20 | E-GEOD-6190 | biostudies-arrayexpress
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