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TranscriptomicsTranscriptome Profile of CYC2 K.O. and WT during meiosis in Tetrahymena thermophila
Meiotic recombination is carried out through a specialized pathway for the formation and repair of DNA double-strand breaks (DSBs) made by the Spo11 protein. The present study shed light on the functional role of Cyclin, CYC2, in Tetrahymena thermophila which has transcriptionally high expression le...
ORGANISM(S): Tetrahymena thermophila 
2016-04-06 | E-GEOD-79286 | biostudies-arrayexpress
TranscriptomicsGenome-Wide gene expression of Tetrahymena thermophila conjugation
Eleven genome wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila used to study gene expression in conjugation cells (C-0, C-15m, C-2, C-4, C-6, C-8, C-10, C-12, C-14, C-16, C-18). Combined these eleven microarrays with 50 mi...
ORGANISM(S): Tetrahymena thermophila 
2011-06-13 | E-GEOD-26650 | biostudies-arrayexpress
TranscriptomicsGenome-Wide Microarray Analysis of Gene Expression During Starvation in Tetrahymena thermophila
Two genome-wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila were used to study gene expression in starved cells (starvation 0 hour and starvation 24 hour). Combining these two microarrays with 50 microarrays described in M...
ORGANISM(S): Tetrahymena thermophila 
2011-06-13 | E-GEOD-26384 | biostudies-arrayexpress
TranscriptomicsGenome-Wide Microarray Analysis of Gene Expression During Starvation in Tetrahymena thermophila
Four genome wide microarrays containing the predicted coding sequences (putative genes) for the ciliated protozoan Tetrahymena thermophila used to study gene expression in starved cells (Starvation 0 hour and Starvation 9 hour, each two replicates). Combined these four microarrays with 50 microarray...
ORGANISM(S): Tetrahymena thermophila 
2011-06-13 | E-GEOD-26385 | biostudies-arrayexpress
TranscriptomicsExpression changes in Tetrahymena thermophila TRX1 and EZL2 gene knockouts and after hydroxyurea (HU) treatment
12 genome-wide microarrays to investigate the Tetrahymena thermophila gene expression changes in TRX1 and EZL2 gene knockout and hydroxyurea (HU) treatment conditions. For the TRR1 knockout (KO) condition, wild type (WT427) cells and TRX1 KO cells were cultured using 1XSPP, 30 degrees, 100 rpm shaki...
ORGANISM(S): Tetrahymena thermophila 
2013-09-04 | E-GEOD-44990 | biostudies-arrayexpress
TranscriptomicsSequence, Biogenesis, and Function of Diverse sRNA Classes Bound to the Piwi-family Proteins of Tetrahymena thermophila
PAZ/PIWI-domain (PPD) proteins carrying small RNAs (sRNAs) function in gene and genome regulation. The ciliate Tetrahymena thermophila encodes numerous PPD proteins exclusively of the Piwi clade. We show that the three Tetrahymena Piwi-family proteins (Twis) preferentially expressed in growing cells...
ORGANISM(S): Tetrahymena thermophila 
2009-11-23 | E-GEOD-17006 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Tetrahymena thermophila
We present a comprehensive transcriptome of ciliate T. thermophila using the Illumina RNA-seq platform. The data was generated from the six mRNA samples of growth, starvation and conjugation of Tetrahymena. Despite an AT rich genome, there are about 124.6 million reads mapped to T. thermophila genom...
ORGANISM(S): Tetrahymena thermophila 
2012-03-15 | E-GEOD-27971 | biostudies-arrayexpress
GenomicsNucleosome mapping of Tetrahymena thermophila chromatin in vivo and in vitro
A conserved hallmark of eukaryotic chromatin architecture is the distinctive array of well-positioned nucleosomes downstream of transcription start sites (TSS). Recent studies indicate that trans-acting factors establish this stereotypical array. Here, we present the first genome-wide in vitro and i...
ORGANISM(S): Tetrahymena thermophila 
2015-07-30 | E-GEOD-64061 | biostudies-arrayexpress
TranscriptomicsGenome-Wide Microarray Analysis of Histone H2B Ubiquitylation mutant strains of Tetrahymena thermophila
Microarray analyses were performed to compare the gene expression profiles of wild-type and several mutant strains of the ciliated protozoan Tetrahymena thermophila. Elimination of H3K4 methylation (hht2-K4Q) and knockout of either of the ubiquitylation enzymes (delta-UBC2 and delta-BRE1) affects a ...
ORGANISM(S): Tetrahymena thermophila 
2010-06-20 | E-GEOD-18743 | biostudies-arrayexpress
TranscriptomicsAnalysis of conjugation-specific 26-32nt siRNAs of Tetrahymena thermophila
Distinct classes of small RNAs are often selectively sorted to different Argonaute proteins. Various properties of small RNAs, such as length, terminal nucleotide, thermodynamic asymmetry and duplex mismatches, can impact sorting in different RNA silencing pathways in diverse eukaryotes. The develop...
ORGANISM(S): Tetrahymena thermophila 
2012-10-01 | E-GEOD-37696 | biostudies-arrayexpress
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