Thalassiosira pseudonana

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Unknown (174)
Genomics (125)
Transcriptomics (40)
Proteomics (21)
Metabolomics (19)
Models (3)

Organisms

Thalassiosira pseudonana (26)
Thalassiosira pseudonana CCMP1335 (21)
Andropogon gerardi (16)
Bacteria (16)
Canis lupus familiaris (16)
Cnidaria (16)
Ensifer adhaerens (16)
Phaeodactylum tricornutum (7)
Fragilariopsis cylindrus (2)
Alteromonas macleodii (1)
Amphora coffeiformis (1)
Aureococcus anophagefferens (1)
Bathycoccus prasinos (1)
Chaetoceros sp. CCMP199 (1)
Cryptococcus neoformans (1)
Cyanidioschyzon merolae (1)
Cylindrotheca closterium (1)
Emiliania huxleyi (1)
Fragilariopsis cylindrus CCMP1102 (1)
Leishmania major (1)
Micromonas pusilla (1)
Ostreococcus sp. 'lucimarinus' (1)
Pseudo-nitzschia multiseries (1)
Thalassiosira oceanica (1)
Fistulifera pelliculosa (1)
Arabidopsis thaliana (1)
Homo sapiens (1)
Nannochloropsis oceanica (1)
Nicotiana benthamiana (1)
Oryza sativa (1)

Organisms

Thalassiosira pseudonana (41)
seawater metagenome (28)
Thalassiosira pseudonana CCMP1335 (12)
Ruegeria pomeroyi DSS-3 (12)
Phaeodactylum tricornutum (4)

Repository

ENA (122)
geo (25)
biostudies-arrayexpress (18)
pride (16)
MetaboLights (9)
GNPS (5)
MetabolomicsWorkbench (5)
MassIVE (4)
BioModels (3)
iProX (1)

Tissue

Cell culture (6)
Photosynthetic cell (3)
Cells (2)
Cell suspension culture (2)
Algae (1)
Plankton (1)
Cultured cells (1)
Diploid cell (1)
Embryo (1)
Plant cell (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (10)
Mass spectrometry (7)
NMR (3)
Gel-based experiment (3)
ESI (2)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Thermo Scientific LTQ FT Ultra (3)
N/A (2)
Q Exactive (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - positive - reverse phase (2)
Dionex instrument model (1)
Q Exactive Plus (1)
7-Tesla Fourier-transform ion cyclotron resonance mass spectrometer (FT-ICR MS, Thermo Scientific) (1)
Orbitrap Fusion (1)
TimsTOF (1)
TimsTOF HT (1)
TSQ Vantage (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (11)
2013 (8)
2020 (7)
2022 (7)
2017 (7)
2024 (5)
2019 (5)
2014 (4)
2010 (4)
2026 (4)
2025 (4)
2012 (3)
2008 (3)
2023 (3)
2011 (2)
2021 (2)
2016 (1)

CHEBI ID

CHEBI:16457 (4)
CHEBI:17148 (4)
CHEBI:17750 (4)
CHEBI:16027 (4)
CHEBI:28681 (3)
CHEBI:16610 (3)
CHEBI:16680 (3)
CHEBI:17196 (3)
CHEBI:16828 (3)
CHEBI:17822 (3)
CHEBI:18019 (3)
CHEBI:17295 (3)
CHEBI:17509 (3)
CHEBI:16467 (3)
CHEBI:17203 (3)
CHEBI:17895 (3)
CHEBI:16335 (3)
CHEBI:18050 (3)
CHEBI:84373 (2)
CHEBI:59640 (2)
CHEBI:30653 (2)
CHEBI:28300 (2)
CHEBI:22660 (2)
CHEBI:15611 (2)
CHEBI:26986 (2)
CHEBI:26271 (2)
CHEBI:24898 (2)
CHEBI:18211 (2)
CHEBI:16691 (2)
CHEBI:27592 (2)

Metabolite Name

L-arginine (3)
L-glutamine (3)
L-proline (3)
L-asparagine (3)
S,S-dimethyl-beta-propiothetin (2)
S-adenosyl-L-homocysteine (2)
Glycine betaine (2)
L-tyrosine (2)
L-lysine (2)
L-histidine (2)
L-citrulline (2)
L-aspartic acid (2)
Putrescine (2)
L-threonine (2)
L-glutamic acid (2)
Homospermidine (1)
Norspermidine (1)
Betaine homarine (1)
L-methionine-(S)-S-oxide (1)
L-proline betaine (1)
L-arginine, methyl ester (1)
N-methylnicotinate (1)
N(omega),N(omega)-dimethyl-L-arginine (1)
O-isovalerylcarnitine (1)
Chitobiose (1)
O-propanoyl-L-carnitine (1)
Tri-N-acetylchitotriose (1)
Pipecolic acid (1)
1,3-diaminopropane (1)
N,N'-diacetylchitobiose (1)

IsPrivate

False (3)

Submitter Keywords

Not Peer Reviewed (3)

First Public Date

2025 (66)
2013 (10)
2019 (7)
2022 (6)
2015 (6)
2014 (6)
2026 (5)
2017 (4)
2023 (3)
2020 (3)
2018 (3)
2024 (2)
2021 (1)

Modelling Approach

Constraint-based model (3)

Study type

Transcription profiling by array (8)
Unknown experiment type (3)
RNA-seq of coding RNA (3)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
ChIP-seq (1)

Release Date

2017 (20)
2015 (15)
2021 (15)
2013 (14)
2020 (14)
2018 (12)
2023 (11)
2022 (11)
2024 (9)
2016 (9)
2011 (8)
2025 (8)
2014 (7)
2012 (7)
2010 (7)
2009 (7)
2019 (6)
2008 (5)
2026 (2)
2007 (2)
2006 (1)
2005 (1)
2001 (1)

Lab affiliation

University of Washington, Department of Genome Sciences (4)
B CUBE Technische Universität Dresden Tatzberg 41 03107 Dresden (1)
B Cube, TU Dresden, Germany (1)
Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona 08003, Catalonia, Spain (1)
College of Environment and Ecology, Xiamen University, China (1)
Earth and Enviornmental Sciences; Rutgers University-Newark; Newark, NJ, USA (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
LPCV/EDY-IRIG-CEA Grenoble 17 av des martyrs 38100 France (1)
State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China (1)
University of Cádiz/IVAGRO (1)
University of Washington (1)
University of Washington Department of Genome Sciences (1)
Woods Hole Oceanographic Institution, Marine Chemistry and Geochemistry Department (1)

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Dissolved organic matter produced by Thalassiosira pseudonana

Phytoplankton are significant producers of dissolved organic matter (DOM) in marine ecosystems but the identity and dynamics of this DOM remain poorly constrained. Knowledge on the identity and dynamics of DOM are crucial for understanding the molecular-level reactions at the base of the global carb...

2014-12-12 | MTBLS144 | MetaboLights

Metabolic consequences of cobalamin scarcity in diatoms as revealed through metabolomics (Thalassiosira pseudonana study)

Diatoms perform about 20% of photosynthesis on earth, play a crucial role in forming the base of the marine food web, and sequester anthropogenic carbon into the deep ocean through the biological pump. In some areas of the ocean, diatom growth is limited by the organic micronutrient cobalamin (vi...

2019-06-04 | MTBLS703 | MetaboLights

Thalassiosira pseudonana exposure to benzopyrene BaP

Comparison of transcriptional profile of Thalassiosira pseudonana exposed for 24h to 36.45 ug/L BaP and methanol-treated controls. Four biological replicates (BaP treatment) and six biological replicates (controls).

ORGANISM(S): Thalassiosira pseudonana

2012-02-15 | E-MEXP-3558 | biostudies-arrayexpress

Gene profiling of Thalassiosira pseudonana under various growth conditions

This SuperSeries is composed of the following subset Series: GSE9660: Profiling the transcriptome of Thalassiosira pseudonana under environmentally relevant growth conditions GSE9661: Profiling the transcriptome of Thalassiosira pseudonana under silicon replete and deplete growth Refer to individual...

ORGANISM(S): Thalassiosira pseudonana CCMP1335

2010-05-26 | E-GEOD-9697 | biostudies-arrayexpress

Thalassiosira pseudonana iTRAQ-LC-MSMS

We applied an iTRAQ-based quantitative proteomic approach to compare the protein expression profiles of Thalassiosira pseudonana grown in nutrient-replete, and N-, P- and Si-deficient conditions.

ORGANISM(S): Thalassiosira pseudonana CCMP1335

2019-11-12 | PXD011133 | Pride

Thalassiosira pseudonana LC-MSMS

To generate a baseline proteomic profile of Thalassiosira pseudonana, three samples collected at the exponential, stationary and decline phases were subject to proteomic analysis.

ORGANISM(S): Thalassiosira pseudonana CCMP1335

2023-05-10 | PXD027392 | Pride

Lc-msms Thalassiosira pseudonana Diatom Marine diatom

Thalassiosira pseudonana

Thalassiosira pseudonana TAG accumulation Project

PRJNA79899 | ENA

Thalassiosira pseudonana

Thalassiosira pseudonana gene expression profiling - Thaps_TP1 transcriptome

PRJNA584621 | ENA

Thalassiosira pseudonana

Thalassiosira pseudonana gene expression profiling - Thaps_TP6 transcriptome

PRJNA584624 | ENA