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MetabolomicsMetabolic consequences of cobalamin scarcity in diatoms as revealed through metabolomics (Thalassiosira pseudonana study)

Diatoms perform about 20% of photosynthesis on earth, play a crucial role in forming the base of the marine food web, and sequester anthropogenic carbon into the deep ocean through the biological pump. In some areas of the ocean, diatom growth is limited by the organic micronutrient cobalamin (vi...

2019-06-04 | MTBLS703 | MetaboLights
GenomicsThalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335 Genome sequencing and assembly
PRJNA487266 | ENA
TranscriptomicsGene profiling of Thalassiosira pseudonana under various growth conditions
This SuperSeries is composed of the following subset Series: GSE9660: Profiling the transcriptome of Thalassiosira pseudonana under environmentally relevant growth conditions GSE9661: Profiling the transcriptome of Thalassiosira pseudonana under silicon replete and deplete growth Refer to individual...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2010-05-26 | E-GEOD-9697 | biostudies-arrayexpress
GenomicsThalassiosira pseudonana CCMP1335
Characterization of small RNA transcriptome in the diatom, Thalassiosira pseudonana
PRJNA79863 | ENA
ProteomicsThalassiosira pseudonana iTRAQ-LC-MSMS
We applied an iTRAQ-based quantitative proteomic approach to compare the protein expression profiles of Thalassiosira pseudonana grown in nutrient-replete, and N-, P- and Si-deficient conditions.
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2019-11-12 | PXD011133 | Pride
Thalassiosira pseudonana Diatom Lc-msms Itraq 
GenomicsThalassiosira pseudonana CCMP1335
Distinct genome-wide alternative polyadenylation during silicon starvation response of marine diatom Thalassiosira pseudonana
PRJNA417734 | ENA
ProteomicsThalassiosira pseudonana LC-MSMS
To generate a baseline proteomic profile of Thalassiosira pseudonana, three samples collected at the exponential, stationary and decline phases were subject to proteomic analysis.
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2023-05-10 | PXD027392 | Pride
Lc-msms Thalassiosira pseudonana Diatom Marine diatom 
GenomicsThalassiosira pseudonana CCMP1335
Diel growth of Thalassiosira pseudonana
PRJNA193321 | ENA
TranscriptomicsProfiling the transcriptome of Thalassiosira pseudonana under environmentally relevant growth conditions
T. pseudonana gene-specific arrays were used for differential gene expression. Seven hundred nine genes were differentially expressed by more than 2-fold (Bayesian t-test, p< 0.001) under at least one growth-limiting condition relative to nutrient-replete conditions. A striking result of the hierarc...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2010-05-26 | E-GEOD-9660 | biostudies-arrayexpress
ProteomicsHybrid CCM in Thalassiosira pseudonana
Manipulated carbonate chemistry to disentangle proteins involved in the carbon concentrating mechanism (CCM) of Thalassiosira pseudonana from other cellular mechanisms that employ the same proteins. The malate/oxaloacetate shuttle shares overlap with biochemical CCMs while also supporting pH regula...
ORGANISM(S): Thalassiosira pseudonana CCMP1335 
2025-10-13 | PXD064793 | Pride
Thalassiosira pseudonana Carbon concentrating mechanism Hybrid ccm 
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