The Inge I - OmicsDI

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Genomics (71)
Unknown (45)
Transcriptomics (36)
Proteomics (11)
Models (1)
Other (1)
Metabolomics (1)

Organisms

Homo sapiens (94)
Mus musculus (10)
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 (3)
Salmonella enterica subsp. enterica serovar Typhi str. CT18 (3)
Burkholderia multivorans ATCC 17616 (3)
Burkholderia diffusa (3)
Theocolax elegans (3)
Bungarus (3)
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (3)
Fructobacillus tropaeoli (3)
Piscirickettsia salmonis AUSTRAL-005 (3)
Xanthomonas citri pv. fuscans (3)
Bacillus cereus ATCC 10987 (3)
Leporidae (3)
Streptomyces venezuelae ATCC 10712 (3)
Polytomella sp. SAG 198.80 (3)
Chroococcidiopsis sp. CCMEE 029 (3)
Thermothelomyces thermophilus ATCC 42464 (3)
Coxsackievirus B3 (3)
Clostridioides difficile 050-P50-2011 (3)
NEWT:5306 (3)
Legionella pneumophila subsp. pneumophila Lp02 (3)
Lineus longissimus (3)
Salvia dominica (3)
Paracidovorax citrulli (3)
Tardigrada (2)
Hypomesus transpacificus (1)
Vigna unguiculata (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Caenorhabditis elegans (1)

Repository

EGA (67)
biostudies-arrayexpress (40)
PAXDB (3)
pride (3)
iProX (2)
MassIVE (2)
BioModels (1)
GPMDB (1)
MetaboLights (1)
PanoramaPublic (1)

Tissue

Milk (1)
Urine (1)
Heart (1)
Skeletal muscle (1)
Liver (1)

Disease

Acute myeloid leukemia (1)
Not Available (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (2)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Mass spectrometry (1)
Data-dependent acquisition (1)
Bottom-up proteomics (1)

Instrument Platform

NA (4)
Illumina HiSeq 4000 (2)
Q Exactive (2)
Active Motif Catalog No. 53150 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
Illumina (1)
DNBSEQ-T7 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
Instrument (1)
Liquid Chromatography MS - alternating (1)

Publication Date

2010 (10)
2016 (7)
2025 (5)
2011 (5)
2017 (5)
2014 (4)
2013 (3)
2015 (2)
2019 (2)
2012 (2)
2009 (2)
2026 (1)
2024 (1)
2022 (1)
2023 (1)
2018 (1)

UNIPROT ID/AC

4565.Traes_6BL_7799EECBB.1 (3)
4565.Traes_5DL_9E6F66306.2 (3)
A0A3B6LW21_WHEAT (3)
4565.Traes_7AL_F5534777D.1 (3)
4565.Traes_1BL_C86F8C02A.1 (3)
A0A3B6FUU8_WHEAT (3)
4565.Traes_1BL_0D5375344.1 (3)
4565.Traes_5AL_232414653.1 (3)
A0A3B6EF89_WHEAT (3)
4565.Traes_2DS_65A89094D.1 (3)
4565.Traes_7BL_09E7513CB.1 (3)
4565.Traes_1DL_34DA247531.1 (3)
4565.Traes_3B_15FC2C014.1 (3)
4565.Traes_1DS_D1B39A182.1 (3)
A0A3B6AXY6_WHEAT (3)
4565.Traes_2BS_F2A8D87C5.1 (3)
4565.Traes_2BL_E20D7B8CA1.1 (3)
4565.Traes_7DS_4E621A250.2 (3)
4565.Traes_5AL_C3F3E95BC.1 (3)
4565.Traes_6AL_934384210.1 (3)
4565.Traes_7DL_F5534777D.1 (3)
4565.Traes_4AS_F08668B5A.1 (3)
4565.Traes_7DL_CDEB2E55D.1 (3)
4565.Traes_4DL_BF24DFB52.1 (3)
4565.Traes_4DS_DB778297B.1 (3)
4565.Traes_3AL_08B0C8C4A.1 (3)
A0A3B6RFH8_WHEAT (3)
A0A3B6SMI1_WHEAT (3)
4565.Traes_6AS_99F9277FB.1 (3)
4565.Traes_4DS_030590E8C.1 (3)

CHEBI ID

CHEBI:18116 (1)
CHEBI:35490 (1)
CHEBI:22681 (1)
CHEBI:82725 (1)
CHEBI:67040 (1)
CHEBI:24583 (1)
CHEBI:86468 (1)
CHEBI:47878 (1)
CHEBI:23399 (1)
CHEBI:64304 (1)
CHEBI:90333 (1)
CHEBI:49268 (1)
CHEBI:22605 (1)
CHEBI:137527 (1)
CHEBI:45441 (1)
CHEBI:45658 (1)
CHEBI:18095 (1)
CHEBI:8959 (1)
CHEBI:30653 (1)
CHEBI:17553 (1)
CHEBI:134287 (1)
CHEBI:26008 (1)
CHEBI:17822 (1)
CHEBI:15721 (1)
CHEBI:26271 (1)
CHEBI:25094 (1)
CHEBI:17858 (1)
CHEBI:16856 (1)
CHEBI:36313 (1)
CHEBI:15978 (1)

Metabolite Name

Deoxycytidine (1)
Acetyl-serine (1)
Pseudouridine-5-phosphate (1)
Glycerophosphocholine (1)
N-acetylspermidine (1)
Trypanothione-disulfide (1)
Glutamate-semialdehyde (1)
Glycerylphosphorylethanolamine (1)
Iridine (1)
Ovothiol (1)
Capryloylglycine (1)
Diethanolamine (1)
S-adenosylmethionine (1)
Hexitol (1)
Dimethylarginine (1)
Hexose phosphate (1)
Methylcysteine (1)
Indoleacrylic acid (1)
Glutamylalanine (1)
Phosphorylethanolamine (1)
Proline betaine (1)
Coumarate (1)
Arabitol (1)
Trans-4-Hydroxy-L-proline (1)
Sedoheptulose-7-phosphate (1)
S-Glutathionyl-L-cysteine (1)
Glutathione disulfide (1)
Homoserine (1)
Glutamic acid (1)
Aspartic acid (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (26)
ChIP-seq (4)
Comparative genomic hybridization by array (2)
ATAC-seq (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2010 (10)
2016 (8)
2025 (7)
2014 (7)
2024 (7)
2022 (7)
2019 (6)
2023 (6)
2011 (5)
2015 (4)
2021 (4)
2013 (3)
2026 (2)
2012 (2)
2009 (2)
2020 (2)
2018 (2)
2017 (1)

Lab affiliation

Flemish Institute for Technological Research (VITO) Boeretang 200 2400 Mol (1)
Cell Biology Department Institute of Integrative Biology of the Cell (I2BC,UMR9198) 1, Avenue de la Terrasse (1)
1Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands 2Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)

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RNA Sequencing Reveals Specific TranscriptomicSignatures Distinguishing Effects of the [SWI⁺] Prion and SWI1 Deletion in Yeast Saccharomyces cerevisiae.

Not available

S-EPMC6471900 | biostudies-literature

Redefining the megagenus Erica L. (Ericaceae): the contributions of E. G. H. Oliver and I. M. Oliver (nee Nitzsche) to taxonomy and nomenclature.

Not available

S-EPMC11245645 | biostudies-literature

Transcriptional profiling of Caenorhabditis elegans whole-organism extract and subsequent co-immune precipitation of mRNA with the poly-A binding protein FLAG::PAB-1 specifically expressed in body wall muscle cells.

Tissue specific microarray data is obtained by generating a whole-organism extract and subsequent co-immune precipitation of mRNA with the poly-A binding protein FLAG::PAB-1 specifically expressed in body wall muscle cells (Roy et al. 2002). Different lines were compared: SV911 (control), SV912 (CY...

ORGANISM(S): Caenorhabditis elegans

2011-11-25 | E-TABM-886 | biostudies-arrayexpress

Cytoplasmic retention of protein phosphatase 2A inhibitor 2 (I2PP2A) induces Alzheimer-like abnormal hyperphosphorylation of Tau.

Not available

S-EPMC4183805 | biostudies-literature

Effect of negative pressure wound therapy after surgical removal of deep-seated high-malignant soft tissue sarcomas of the extremities and trunk wall-study protocol for a randomized controlled trial.

Not available

S-EPMC9206250 | biostudies-literature

Comparing Methods for Targeted Axillary Dissection in Breast Cancer Patients: A Nationwide, Retrospective Study.

Not available

S-EPMC10506928 | biostudies-literature

Transient intracranial pressure elevations (B waves) are associated with sleep apnea.