Thomas James J - OmicsDI

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Unknown (903)
Genomics (152)
Transcriptomics (37)
Proteomics (29)
Metabolomics (10)
Models (1)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (169)
Mus musculus (13)
Saccharomyces cerevisiae (5)
Rattus norvegicus (2)
Escherichia coli (1)
Macaca mulatta (1)
Blumeria graminis (1)
Ovis aries (1)
Caenorhabditis elegans (1)
Limnospira maxima (1)
Limnospira platensis (1)
Rattus rattus (1)

Organisms

Mus musculus (1)

Repository

EGA (151)
biostudies-arrayexpress (36)
MassIVE (20)
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pride (6)
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Cell culture (3)
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Disease

Disease free (1)

Technology Type

Illumina 15K (8)
Mass spectrometry (6)
Mass Spectrometry (6)
Illumina HiSeq 2000 (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
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Shotgun proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
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Q Exactive (8)
Illumina NovaSeq 6000 (3)
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LTQ Orbitrap (3)
5975C Series GC/MSD (Agilent) (3)
Liquid Chromatography MS - positive - reverse phase (3)
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2010 (8)
2014 (7)
2020 (6)
2011 (6)
2022 (6)
2017 (6)
2024 (5)
2012 (4)
2007 (4)
2021 (4)
2026 (3)
2018 (3)
2008 (3)
2023 (3)
2016 (2)
2019 (2)
2013 (2)
2005 (1)
2009 (1)
2025 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)
A0PJX4 (1)
A1L0T0 (1)
A1L390 (1)
A2A3K4 (1)
A2BFH1 (1)
A2NUT2 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16199 (6)
CHEBI:17368 (6)
CHEBI:15428 (5)
CHEBI:16015 (5)
CHEBI:16737 (5)
CHEBI:17084 (5)
CHEBI:17568 (5)
CHEBI:18012 (5)
CHEBI:20067 (5)
CHEBI:30769 (5)
CHEBI:15699 (4)
CHEBI:15741 (4)
CHEBI:16335 (4)
CHEBI:16708 (4)
CHEBI:17306 (4)
CHEBI:17596 (4)
CHEBI:17821 (4)
CHEBI:17992 (4)
CHEBI:28044 (4)
CHEBI:33508 (4)
CHEBI:1148 (3)
CHEBI:15756 (3)
CHEBI:15891 (3)
CHEBI:15940 (3)
CHEBI:16000 (3)
CHEBI:16010 (3)
CHEBI:16196 (3)
CHEBI:16359 (3)
CHEBI:16414 (3)
CHEBI:16797 (3)

Metabolite Name

3-hydroxybutyric acid (3)
Hypoxanthine (3)
2-Hydroxyglutarate (2)
Fumaric acid (2)
Glycine (2)
L-glutamic acid (2)
L-homoserine (2)
Methylsuccinic acid (2)
Phenylalanine (2)
Succinic acid (2)
Uracil (2)
1,3-Diaminopropane (1)
1,3-dimethylurate (1)
1-Methylhistidine (1)
1-O-octadecylglycerol (1)
1-hexadecanol (1)
1-methylurate (1)
1-methylxanthine (1)
1-monopalmitin (1)
10-Heptadecanoate (1)
11-dehydrocorticosterone (1)
11-eicosenoic acid (1)
13-HODE (1)
16a-hydroxy DHEA 3-sulfate (1)
2,3-butanediol (1)
2-Hydroxydecanoate (1)
2-Hydroxyhexanoate (1)
2-Hydroxyoctanoate (1)
2-Hydroxypalmitate (1)
2-Hydroxystearate (1)

IsPrivate

False (1)

First Public Date

2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (25)
RNA-seq of coding RNA (7)
Unknown experiment type (3)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (114)
2022 (113)
2023 (89)
2025 (76)
2024 (64)
2020 (59)
2018 (56)
2019 (54)
2015 (52)
2014 (39)
2016 (38)
2017 (35)
2011 (32)
2012 (30)
2013 (24)
2026 (19)
2010 (16)
2009 (12)
2008 (9)
2007 (6)
2003 (1)
2002 (1)

Lab affiliation

Australian Institute of Tropical Health and Medicine. Centre for Molecular Therapeutics. James Cook Univerisity, Cairns. (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Institute of Biochemistry and Molecular Biology, ZBMZ, Faculty of Medicine, University of Freiburg, Freiburg 79104, Germany CIBSS - Centre for Integrative Biological Signalling Studies, University of Freiburg, Freiburg 79104, Germany (1)
Institute of Structural and Molecular Biology, University College London, London, United Kingdom (1)
The Institute of Cancer Research, London (1)

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Thomas James Kitson Merritt

Not available

S-EPMC1122931 | biostudies-literature

A patient-clinician James Lind Alliance partnership to identify research priorities for hyperemesis gravidarum.

Not available

S-EPMC7813320 | biostudies-literature

Priority III: top 10 rapid review methodology research priorities identified using a James Lind Alliance Priority Setting Partnership.

Not available

S-EPMC9487890 | biostudies-literature

Secondary analysis of a James Lind Alliance priority setting partnership to facilitate knowledge translation in degenerative cervical myelopathy (DCM): insights from AO Spine RECODE-DCM.

Not available

S-EPMC10357680 | biostudies-literature

Fuel for the Damage Induced"""": Untargeted Metabolomics in Elite Rugby Union Match Play

The metabolic perturbations caused by competitive rugby are not well characterized. Our aim is to utilize untargeted metabolomics to develop appropriate interventions, based on the metabolic fluctuations that occur in response to this collision-based team sport. Seven members of an English Premiersh...

2021-09-06 | MTBLS2967 | MetaboLights

[E-MTAB-599] Mouse Transcriptome

Sequencing the transcriptome of DBAxC57BL/6J mice. To study the regulation of transcription, splicing and RNA turnover we have sequenced the transcriptomes of tissues collected DBAxC57BL/6J mice. We strongly encourage researchers to contact us if there is any queries about referencing or publishing ...

ORGANISM(S): Mus musculus

2011-07-14 | GSE30617 | GEO

Lenalidomide and rituximab for the initial treatment of patients with chronic lymphocytic leukemia: a multicenter clinical-translational study from the chronic lymphocytic leukemia research consortium.

Not available

S-EPMC4067945 | biostudies-literature

Phase I trial of MK-0752 in children with refractory CNS malignancies: a pediatric brain tumor consortium study.

Not available

S-EPMC3179253 | biostudies-literature

Cab45-dependent facilitation of insulin secretory granule biogenesis and its dysregulation in type 2 diabetes

Germanos M1*. Yau B1*. Taper M1. An Y1. Yeoman C1. Wilson A1. Cattin-Ortolá J2. Maslar D3. Tong J1. Naghiloo S1. Needham E4. Diaz-Vegas A4. Larance M1. Thomas H5. Seidah NG6. von Blume J7. James DE4. Thorn P1. Ailion M2. Asensio C3. Kebede MA1. 1 School of Medical Sciences, Charles Perkins Centre, ...

ORGANISM(S): Rattus rattus (Black rat)

2024-12-02 | PXD052042 | Pride

Isolation, Molecular Characterisation, and Immunomodulatory Effects of Extracellular Vesicles From Spirulina Microalgae

SPEVs (Spirulina EV) were isolated through a combination of techniques involving ultracentrifugation and size exclusion chromatography. Cryo-Transmission Electron Microscopy revealed the presenc of pleomorphic outer-membrane-vesicles (OMVs) and outer-inner-membrane-vesicles (OIMVs) displaying divers...

ORGANISM(S): Arthrospira platensis Limnospira maxima

2024-12-19 | PXD052246 | Pride

Spirulina Extracellular vesicles Proteomics

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