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ProteomicsA genetic model for in vivo proximity labeling of the mammalian secretome
Yang R, Meyer AS, Droujinine I, Udeshi ND, Hu Y, Guo J, McMahon J, Carey DK, Xu C, Qiao F, Sha J, Qin S, Rocco D, Wohlschlegel J, Ting AY, Carr SA, Perrimon N, McMahon AP. 2022. Organ functions are highly specialized and interdependent. Tissue-specific secreted factors play a critical role in organ...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2022-02-16 | MSV000088848 | MassIVE
UnknownPhase I Imaging and Pharmacodynamic Trial of CS-1008 in Patients With Metastatic Colorectal Cancer.
Not available
S-EPMC4881374 | biostudies-literature
ProteomicsRepurposing E3 ubiquitin ligases as cell surface protein degraders using Proteolysis Targeting Antibodies
The majority of current therapeutics targeting plasma membrane receptors function by antagonizing ligand binding or enzymatic activities. Typical mammalian proteins, however, consist of multiple domains executing discrete but coordinated activities, and saturating inhibition of one functional domain...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-05-25 | MSV000089542 | MassIVE
ProteomicsBovine liver phosphoproteomics LC MS/MS
Variation in voluntary dry matter intake (DMI) is an important component of feed efficiency in finishing cattle; however, the molecular processes associated with individual variation in DMI remain poorly understood. The liver contributes to DMI regulation through both cell signaling and vagal signal...
ORGANISM(S): Bos taurus (Bovine) 
2026-10-19 | PXD083668 | Pride
Bovine Liver Phosphoproteomics 
TranscriptomicsGene Expression Profiles in Peripheral Blood Mononuclear Cells Can Distinguish Patients with NonSmall Cell Lung Cancer.
We report a 29-gene diagnostic signature, which distinguishes individuals with NSCLC from controls with non-malignant lung disease with 91% Sensitivity, 79% Specificity and a ROC AUC of 92%. Accuracy on an independent set of 18 NSCLC samples from the same location was 79%. Samples from an independe...
ORGANISM(S): Homo sapiens 
2010-04-09 | E-GEOD-13255 | biostudies-arrayexpress
ProteomicsPBRM1-deficient PBAF complexes target de novo genomic loci to activate pro-survival genes in clear cell renal cell carcinoma (PBRM1 dataset)
PBRM1 is lost in 40% of clear cell renal cell carcinomas (ccRCC) and the combined loss of VHL and PBRM1 drives ccRCC tumorigenesis. PBRM1 is an accessory subunit of the PBAF subclass of the SWI/SNF chromatin remodeler and despite its well-established role as a tumor suppressor, we have limited under...
ORGANISM(S): Homo Sapiens (human) 
2021-07-24 | PXD020554 | JPOST Repository
ProteomicsPBRM1-deficient PBAF complexes target de novo genomic loci to activate pro-survival genes in clear cell renal cell carcinoma (BRG1 dataset)
PBRM1 is lost in 40% of clear cell renal cell carcinomas (ccRCC) and the combined loss of VHL and PBRM1 drives ccRCC tumorigenesis. PBRM1 is an accessory subunit of the PBAF subclass of the SWI/SNF chromatin remodeler and despite its well-established role as a tumor suppressor, we have limited under...
ORGANISM(S): Homo Sapiens (human) 
2021-07-24 | PXD020553 | JPOST Repository
ProteomicsChemical characterization of clostridithiol compounds in Clostridioides difficile
Stable isotope labeling of clostridithiol compounds 1-8 in liquid cultures of Clostridioides difficile upon supplementation of polyamines & relevant precursors containing carbon-13/deuterium labels in a modified minimal media. MS/MS of targeted compounds was collected at 30 eV collision energy. Data...
ORGANISM(S): Clostridioides Difficile (ncbitaxon:1496) 
2025-06-12 | MSV000098168 | MassIVE
MetabolomicsGNPS - Chemical characterization of clostridithiol compounds in Clostridioides difficile
Stable isotope labeling of clostridithiol compounds 1-8 in liquid cultures of Clostridioides difficile upon supplementation of polyamines & relevant precursors containing carbon-13/deuterium labels in a modified minimal media. MS/MS of targeted compounds was collected at 30 eV collision energy. Data...
ORGANISM(S): Clostridioides Difficile (ncbitaxon:1496) 
2025-06-12 | MSV000098168 | GNPS
ProteomicsHeterologous expression of clostridithiol genes from Clostridioides difficile in Escherichia coli
Detection of clostridithiols from heterologous expression of one or both putative genes for clostridithiol biosynthesis (originating from Clostridioides difficile wild-type 630) in liquid cultures of E. coli BL21(DE3) grown in modified minimal medium
ORGANISM(S): Escherichia Coli Bl21(de3) (ncbitaxon:469008) 
2025-06-12 | MSV000098169 | MassIVE
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