Tissue clearing

OmicsDI

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Unknown (656)
Transcriptomics (113)
Genomics (76)
Proteomics (29)
Other (4)
Metabolomics (3)
Models (1)

Organisms

Mus musculus (65)
Aerococcus urinae NBRC 15544 = CCUG 36881 (28)
Andropogon gerardi (28)
Bacteria (28)
Canis lupus familiaris (28)
Cnidaria (28)
Ectopseudomonas oleovorans CECT 5344 (28)
Ensifer adhaerens (28)
Enterococcus faecalis (28)
Globicatella sanguinis (28)
Halictus scabiosae (28)
Human immunodeficiency virus 1 (28)
Mesocricetus auratus (28)
Methylohalobius crimeensis 10Ki (28)
Miscanthus x giganteus (28)
Homo sapiens (26)
Drosophila melanogaster (21)
Rattus norvegicus (9)
Gallus gallus (2)
Arabidopsis thaliana (2)
Mus (2)
Capra hircus (1)
Nicotiana tabacum (1)
Bos taurus (1)
Sus scrofa (1)
Bubalus bubalis bubalis (1)
HIV-1 group M (1)
Macaca mulatta (1)
synthetic construct (1)
Danio rerio (1)

Organisms

Mus musculus (41)
Homo sapiens (9)
Rattus norvegicus (2)
Mus (1)
Macaca mulatta (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (79)
ENA (62)
geo (51)
pride (28)
MetaboLights (3)
BioModels (1)
EVA (1)
iProX (1)

Tissue

Brain (4)
Heart (4)
Cell culture (3)
Bone marrow (2)
Ovary (2)
Testis (2)
Breast (1)
Embryo (1)
Embryonic cerebral cortex (1)
Esophagus (1)
Kidney (1)
Leaf (1)
Liver (1)
Lower epidermis (1)
Lung (1)
Lymphocyte (1)
Macrophage (1)
Mesophyll (1)
Rheumatoid arthritis disease specific synovial fluid (1)
Sciatic nerve (1)
Seedling (1)
Skin (1)
Spleen (1)
Urinary bladder (1)

Disease

Normal (2)
Alzheimer's disease (2)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Esophagus squamous cell carcinoma (1)
Obesity (1)
Testicular cancer (1)
Transthyretin amyloidosis (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (5)
Data-independent acquisition (5)
Data-dependent acquisition (3)
Mass spectrometry (2)
Mass spectrometry assay (1)
Gel-based experiment (1)
Glycoproteomics (1)
Immunopeptidomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (2)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
NextSeq 2000 (1)
NextSeq 500 (1)
AB 3300 Genetic Analyzer (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (20)
2026 (19)
2025 (18)
2013 (14)
2024 (11)
2022 (11)
2014 (8)
2012 (8)
2021 (7)
2019 (6)
2015 (6)
2011 (6)
2009 (6)
2020 (5)
2023 (4)
2008 (3)
2006 (3)
2007 (2)
2005 (2)
2017 (2)
2004 (1)
2018 (1)

Metabolite Name

PS(O-42:7) PS(P-42:6) (1)
PS(O-42:6/P-42:5)d (1)
PS(O-42:6/P-42:5)b (1)
PS(O-42:6/P-42:5)a (1)
PS(O-42:5/P-42:4) (1)
PS(O-42:3/P-42:2) (1)
PS(O-42:2) PS(P-42:1) (1)
PS(O-40:6/P-40:5)c (1)
PS(O-40:6) PS(P-40:5)b (1)
PS(O-40:6) PS(P-40:5)a (1)
PS(O-40:5/P-40:4)c (1)
PS(O-40:5/P-40:4)b (1)
PS(O-40:5) PS(P-40:4)a (1)
PS(O-40:4/P-40:3) (1)
PS(O-40:3) PS(P-40:2) (1)
PS(O-40:2/P-40:1) (1)
PS(O-40:0) (1)
PS(O-38:6) PS(P-38:5) (1)
PS(O-38:5) PS(P-38:4) (1)
PS(O-38:4/P-38:3) (1)
PS(O-38:3/P-38:2) (1)
PS(O-38:2) PS(P-38:1) (1)
PS(O-38:1) PS(P-38:0) (1)
PS(O-36:3/P-36:2)a (1)
PS(O-34:0) (1)
PS(44:8)b (1)
PS(44:6) (1)
PS(44:5)b (1)
PS(44:5)a (1)
PS(44:4)b (1)

IsPrivate

False (1)

First Public Date

2025 (17)
2026 (13)
2024 (8)
2022 (7)
2021 (5)
2014 (5)
2020 (3)
2023 (1)
2019 (1)
2017 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (35)
Transcription profiling by tiling array (10)
ChIP-seq (9)
RNA-seq of coding RNA (8)
RNA-seq of non coding RNA (5)
ChIP-chip by array (3)
Transcription profiling by SAGE (2)
Unknown experiment type (2)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (92)
2022 (86)
2021 (77)
2023 (72)
2024 (64)
2020 (57)
2019 (47)
2018 (46)
2017 (37)
2010 (23)
2015 (22)
2016 (22)
2014 (18)
2026 (16)
2013 (13)
2012 (12)
2009 (8)
2011 (7)
2008 (5)
2006 (4)
2005 (3)
2007 (2)
2004 (1)
2003 (1)

Lab affiliation

Helmholtz Munich (2)
, Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (lab head) (1)
Biognosys AG (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Department of Biology, University of York, UK (1)
Department of Biomedical Sciences, Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland (1)
Department of Pharmaceutical Sciences, University of Illinois College of Pharmacy,Chicago,IL,USA Richard and Loan Hill Department of Biomedical Engineering, University of Illinois College of Engineering,Chicago, IL,USA University of Illinois Cancer Center,Chicago, IL,USA (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Germany (1)
Developmental Biology of the Innate Immune System Life & Medical Sciences Institute (LIMES) University of Bonn, Germany (1)
Director, Institute for Tissue Engineering and Regenerative Medicine (iTERM) Helmholtz Zentrum München Ingolstädter Landstraße 1 85764 Neuherberg Germany (1)
Division of Endocrinology, Diabetes and Metabolism, Department of Medicine, University of Illinois Chicago, Chicago, Illinois, USA (1)
ETH Zurich (1)
Emory University School of Medicine Department of Biochemistry (1)
Institute for tissue engineering and regenerative medicine, Helmholtz Center Munich (1)
Institute of Bioinformatics, 7th floor, Discoverer Building, International Tech Park, Bangalore, 560 066, India (1)
Institute of Pharmaceutical Sciences, Swiss Federal Institute of Technology (ETH) Zurich, 8093 Zurich, Switzerland (1)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (1)
Laboratoire de Spectrométrie de Masse Protéomique (LSMP) Institut Curie (1)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg, Germany (1)
Research Center of IPO Porto (CI-IPOP)/CI-IPOP@RISE (Health Research Network), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Center Raquel Seruca (Porto.CCC) (1)
Translational Biomarkers, Aalborg University, Denmark (1)
UCLouvain Institut de Recherche Expérimentale et Clinique Pôle de Recherche en Gynécologie Avenue Mounier, 52 Bte. B1.52.02 1200 Bruxelles, Belgique (1)
University of Edinburgh (1)
University of Pennsyvania, Washington University in St. Louis (1)
University of Wisconsin-Madison (1)