Tissue scarring

Show results for

Unknown (687)
Transcriptomics (207)
Genomics (157)
Proteomics (25)
Other (11)
Metabolomics (2)
Clinical (1)
Methylation profiling (1)

Organisms

Mus musculus (100)
Homo sapiens (93)
Andropogon gerardi (17)
Bacteria (17)
Bartonella quintana JK 31 (17)
Canis lupus familiaris (17)
Clavibacter nebraskensis NCPPB 2581 (17)
Cnidaria (17)
Ensifer adhaerens (17)
Human alphaherpesvirus 1 strain 17 (17)
Human alphaherpesvirus 1 strain KOS (17)
Human betaherpesvirus 5 (17)
Human herpesvirus 2 strain 186 (17)
Mesocricetus auratus (17)
Miscanthus x giganteus (17)
Mus musculus (17)
Panicum virgatum (17)
Danio rerio (13)
Rattus norvegicus (12)
Sus scrofa (4)
Acomys cahirinus (2)
Canis lupus familiaris (2)
Notophthalmus viridescens (1)
Ambystoma mexicanum (1)
Malus domestica (1)
Vitis vinifera (1)
Oryctolagus cuniculus (1)
Glycine max (1)
Xiphophorus maculatus (1)
Dasypus novemcinctus (1)

Organisms

Mus musculus (65)
Homo sapiens (42)
Danio rerio (9)
Rattus norvegicus (3)
Acomys cahirinus (2)
Oryctolagus cuniculus (2)
Sus scrofa (2)
Dasypus novemcinctus (1)
Mycobacterium ulcerans (1)
Pleurodeles waltl (1)
Ambystoma mexicanum (1)
Canis lupus familiaris (1)

Repository

ENA (146)
geo (114)
biostudies-arrayexpress (110)
pride (17)
MassIVE (7)
EGA (6)
MetaboLights (2)
iProX (1)

Tissue

Lung (7)
Cell culture (3)
Brain (2)
Fibroblast (2)
Cecum (1)
Kidney (1)
Kidney cell (1)
Liver (1)
Oral epithelium (1)
Oral mucosa (1)
Peritoneum (1)
Skin (1)
Stem cell (1)
Vocal fold (1)

Disease

Infected by E. lata strain NE85-1 (1)
Adenocarcinoma (1)
Breast cancer (1)
Inflammatory Bowel Diseases (1)
Chronic kidney disease (1)
Diffuse pulmonary fibrosis (1)
Idiopathic pulmonary fibrosis (1)
Pulmonary fibrosis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (13)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
Mass spectrometry (1)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
NextSeq 500 (5)
Illumina HiSeq 4000 (3)
LTQ Orbitrap Elite (3)
Illumina HiSeq 2000 (2)
Q Exactive (2)
10X Genomics Chromium Controller Instrument, Thermocycler (PCR machine), Bioanalyzer 2200 (Agilent), Qubit Fluorometer (Thermo Fisher Scientific) (1)
Biological safety cabinet, Water bath (37°C), Centrifuge, 70 µm and 35 µm cell strainers, Countstar Fluorescence Cell Analyzer (1)
Surgical scalpel (1)
Agilent Microarray Scanner G2505c (1)
G2505A DNA microarray scanner [Agilent] (1)
Illumina MiSeq (1)
Exactive Plus (1)
Q Exactive Plus (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (35)
2024 (33)
2020 (18)
2026 (17)
2023 (17)
2014 (15)
2013 (14)
2011 (14)
2022 (12)
2021 (12)
2015 (12)
2010 (9)
2018 (8)
2012 (8)
2019 (6)
2016 (5)
2009 (4)
2008 (4)
2017 (3)
2007 (2)
2006 (2)
2005 (1)

CHEBI ID

CHEBI:16796 (1)
CHEBI:28238 (1)
CHEBI:1547 (1)
CHEBI:89825 (1)
CHEBI:16765 (1)
CHEBI:17890 (1)
CHEBI:43580 (1)
CHEBI:17697 (1)
CHEBI:10072 (1)
CHEBI:28790 (1)
CHEBI:28171 (1)
CHEBI:16031 (1)
CHEBI:35581 (1)
CHEBI:15793 (1)
CHEBI:16411 (1)
CHEBI:24813 (1)
CHEBI:43355 (1)
CHEBI:28747 (1)
CHEBI:28683 (1)
CHEBI:16675 (1)
CHEBI:27897 (1)
CHEBI:18344 (1)

Metabolite Name

Indole (2)
Indole-3-acetamide (2)
Tryptophan (2)
Adefovir Dipivoxil (Preveon, Hepsera) (1)
Indomethacin (Indocid, Indocin) (1)
MLS001148580-01!6ALPHA,9ALPHA-DIFLUOROPREDNISOLONE 21-ACETATE 17-BUTYRATE (1)
Toremifene Citrate (Fareston, Acapodene) (1)
[(1S,7S,8S,8aR)-8-[2-[(2R,4R)-4-hydroxy-6-oxooxan-2-yl]ethyl]-7-methyl-1,2,3,7,8,8a-hexahydronaphthalen-1-yl] (2S)-2-methylbutanoate (1)
(+)-Cycloolivil 4'-O-¦Â-D-glucopyranoside (1)
(+)-Fasciculic acid B (1)
(+)-Lyoniresinol 2¦Á-O-¦Â-D-glucopyranoside (1)
(-)-Medicocarpin;Medicarpin 3-O-glucoside (1)
(-)-Syringaresinol-4-O-¦Â-D-glucopyranoside (1)
(-)-threo-Iso(homo)2-citrate;(-)-threo-1-Hydroxy-1,2,5-pentanetricarboxylic acid;1-Hydroxypentane-1,2,5-tricarboxylate;threo-(Homo)2-isocitrate (1)
(1)Benzopyrano(5,4,3-cde)(1,3)dioxolo(4,5-h)(1)benzopyran-5,11-dione, 1,2,3-trimethoxy- (1)
(1,3-Dihydroxy-6,8a-dimethyl-3-propan-2-yl-1,2,3a,4,5,8-hexahydroazulen-4-yl) 3,4-dimethoxybenzoate (1)
(10-Hydroxy-8,8-dimethyl-2-oxo-9,10-dihydropyrano[2,3-f]chromen-9-yl) (Z)-2-methylbut-2-enoate (1)
(11E)-11-Octadecenoic acid (1R,2S)-2-[[(Z)-9-hexadecenoyl]oxy]-1-methylpropyl ester (1)
(12Z)-9,10,11,14,15,16,17,18,19,20,21,22-Dodecahydro-5,8-ethenobenzo[20]annulene-2,4,6,24-tetrol (1)
(13S)-13-Ethoxy-1,2-dimethoxy-12-methyl-13H-[1,3]benzodioxolo[5,6-c]phenanthridine (1)
(14E)-11-hydroxy-14-(1H-imidazol-5-ylmethylidene)-2-methoxy-9-(2-methylbut-3-en-2-yl)-2,13,16-triazatetracyclo[7.7.0.01,13.03,8]hexadeca-3,5,7-triene-12,15-dione (1)
(14S)-9,20,21,25-Tetramethoxy-15-methyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-1(30),3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,28,31-tetradecaen-2-one (1)
(19E,21E,23E,25E,27E,29E,31E)-17-[7-(4-aminophenyl)-5-hydroxy-4-methyl-7-oxoheptan-2-yl]-1,3,5,33,37-pentahydroxy-18,36-dimethyl-16,39-dioxabicyclo[33.3.1]nonatriaconta-19,21,23,25,27,29,31-heptaene-9,13,15-trione (1)
(19E,21E,23E,25E,27E,29E,31E)-17-[7-(4-aminophenyl)-5-hydroxy-4-methyl-7-oxoheptan-2-yl]-1,3,5,7,33,37-hexahydroxy-18-methyl-9,13,15-trioxo-16,39-dioxabicyclo[33.3.1]nonatriaconta-19,21,23,25,27,29,31-heptaene-36-carboxylate (1)
(1E)-4-hydroxy-1-(4-hydroxy-3-methoxyphenyl)dodec-1-en-3-one (1)
(1E,3Z)-buta-1,3-diene-1,2,4-tricarboxylate (1)
(1R)-1-[(4-hydroxyphenyl)methyl]-6-methoxy-2-methyl-1,2,3,4-tetrahydroisoquinolin-2-ium-7-ol (1)
(1R)-1-[[(2S,3R,11bS)-3-ethyl-9,10-dimethoxy-1,2,3,4,5,6,7,11b-octahydrobenzo[a]quinolizin-5-ium-2-yl]methyl]-7-methoxy-1,2,3,4-tetrahydroisoquinolin-2-ium-6-ol (1)
(1R,10R)-5-amino-14-oxido-14-oxo-13,15,18-trioxa-2,4,6,9-tetraza-14lambda5-phosphatetracyclo[8.8.0.03,8.012,17]octadeca-3(8),4-diene-7,11-dione (1)
(1R,14R,24S)-24-Methoxy-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.02,10.04,8.015,23.018,22]pentacosa-2,4(8),9,15(23),16,18(22)-hexaene (1)

First Public Date

2025 (36)
2024 (30)
2023 (17)
2020 (14)
2026 (13)
2022 (9)
2019 (7)
2014 (7)
2021 (5)
2017 (3)
2018 (2)
2013 (2)
2015 (1)

Classification

bacteria (1)

Study status

Not provided (1)

Study type

Transcription profiling by array (72)
RNA-seq of coding RNA from single cells (11)
RNA-seq of coding RNA (8)
Unknown experiment type (2)
Spatial transcriptomics by high-throughput sequencing (2)
Single nucleus RNA sequencing (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Other (1)
ScATAC-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Interventional (1)

Release Date

2025 (77)
2021 (77)
2020 (73)
2024 (72)
2022 (71)
2023 (69)
2018 (53)
2019 (41)
2017 (40)
2014 (40)
2015 (35)
2016 (27)
2013 (25)
2011 (21)
2026 (20)
2010 (15)
2012 (12)
2009 (8)
2008 (8)
2006 (5)
2007 (4)
2005 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (4)
Binzhou Medical University (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr Aiguader 88, Barcelona 08003, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; ICREA, Pg. Lluis Companys 23, Barcelona 08010, Spain (1)
Department of Chemical and Biological Engineering, Seoul National University, Seoul, South Korea (1)
Department of Pharmacology, College of Basic Medical Sciences, Jilin University, Changchun, 130000, China (1)
Division of Experimental Medicine, McGill University, Montreal, QC, Canada. (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Regenerative Biology and Medicine, Munich, Germany, Member of the German Centre for Lung Research (DZL) (1)
Institute Regenerative Biology and Medicine, Helmholtz Zentrum München (1)
Institute for Stem Cell Research, Helmholtz Center Munich, Germany (1)
John van Geest Cancer Research Centre, School of Science and Technology, Nottingham Trent University, UK (1)
LMU Muenchen (1)
Lung Repair & Regeneration Department, Boehringer Ingelheim Pharma GmbH & Co. KG (1)
Ruth Birner-Gruenberger, Ph.D. Full Professor for Analytical Chemistry Vienna University of Technology Institute of Chemical Technologies and Analytics Getreidemarkt 9/E164 A-1060 Vienna Austria Associate Professor for Biochemistry Medical University of Graz Diagnostic and Research Institute of Pathology Stiftingtalstrasse 24 A-8010 Graz Austria (1)
University of Michigan Medical Center Department of Internal Medicine, Division of Pulmonary and Critical Care Medicine 1150 West Medical Center Drive 6301 MSRB III Ann Arbor, MI 48109-5642 (1)

Location

Singapore (1)

Keyword

Inflammatory bowel disease (1)

Previous page
1 / 110
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 110
Next page

Sort by:

Relevance

Page size

Conjunctival miRNA expression data in scarring and inflammatory trachoma

Ocular infection with Chlamydia trachomatis (trachoma) is the leading cause of blindness that results from infection. Chronic inflammation is believed to drive the scarring process and the progressive blinding disease, however the mechanisms by which this occurs are not completely understood. We hyp...

ORGANISM(S): Homo sapiens

2013-06-11 | E-GEOD-37717 | biostudies-arrayexpress

TANGO1 inhibitors limit tissue scarring

Scarring is a normal outcome of the wound healing program, but excessive secretion of ECM proteins such as collagen can lead to fibrosis and compromise tissue function. Despite the widespread occurrence of fibrosis, effective therapies are lacking. A promising approach would be to limit the amount o...

ORGANISM(S): Homo sapiens (Human)

2024-04-28 | PXD041678 | Pride

Identification and Targeted Inhibition of a Fibroblast Lineage Responsible for Scarring and Cancer Stroma

Dermal fibroblasts represent a heterogeneous population of cells with diverse features that remain largely undefined due to a lack of functional subclasses. Here we reveal the presence of multiple lineages of dermal fibroblasts within the dorsal back. Genetic lineage tracing and transplantation assa...

ORGANISM(S): Mus musculus

2015-05-15 | E-GEOD-65402 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (whole organoids)

Induced pluripotent stem cell (iPSC) derived organoid systems provide models to study human organ development. Single-cell transcriptome sequencing enables highly-resolved descriptions of cell state heterogeneity within these systems and computational methods can reconstruct developmental trajectori...

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10974 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (Visium)

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10972 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (microdissected)

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10973 | biostudies-arrayexpress

Lineage recording in human cerebral organoids (iTracer-perturb)

ORGANISM(S): Homo sapiens

2021-11-03 | E-MTAB-10971 | biostudies-arrayexpress

The conjunctival transcriptome in scarring trachoma for Tanzanians

Trachoma is a poorly understood immuno-fibrogenic disease process, initiated by Chlamydia trachomatis (Ct). Differences in conjunctival gene expression profiles between Tanzanians with trachomatous conjunctival scarring (with (TSI) and without (TS) inflammation) and controls (C) were investigated to...

ORGANISM(S): Homo sapiens

2011-07-31 | E-GEOD-24383 | biostudies-arrayexpress

Human Scarring Project

Full thickness and deep partial thickness burn injuries heal by scarring. There are several mechanisms thought to be essential for the development of burn scars, but a challenge to studying the skin response to burn injury is that there are few animal models of burn scarring that are either clinica...

ORGANISM(S): Homo sapiens

2014-01-22 | E-MTAB-1323 | biostudies-arrayexpress

Swarms of specialized fibroblasts drive scarring through N-cadherin

Injury in mammals induces a connective tissue response to either regenerate as before, or to scar. The fibroblastic actions and mechanisms that underlie these connective tissue responses remain obscure, as direct observation in animals is too difficult and current assays do not faithfully reproduce ...

ORGANISM(S): Mus musculus (Mouse)

2020-10-26 | PXD016068 | Pride

Live imaging Collective migration Fibroblastic swarm Cell lineage Contraction Scad Scarring Scar progenitors N-cadherin

Previous page
1 / 110
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 110
Next page

Sort by:

Relevance

Page size

1091 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Study status

Study type

Release Date

Lab affiliation

Location

Tags

Keyword

OmicsDI is part of the ELIXIR infrastructure

Tweets