Tissue-response

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Unknown (32171)
Transcriptomics (11148)
Genomics (7899)
Proteomics (1110)
Metabolomics (323)
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Methylation profiling (75)
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Multiomics (7)

Organisms

Homo sapiens (4826)
Mus musculus (4589)
Rattus norvegicus (528)
Arabidopsis thaliana (381)
Drosophila melanogaster (187)
Sus scrofa (148)
Bos taurus (137)
Danio rerio (136)
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Saccharomyces cerevisiae (71)
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Oncorhynchus mykiss (48)
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Caenorhabditis elegans (45)
Canis lupus familiaris (41)
Glycine max (32)
Oryza sativa Japonica Group (31)
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Candida albicans (17)
Taeniopygia guttata (14)
Rattus rattus (8)
cellular organisms (6)
Mammalia (1)

Organisms

Mus musculus (2644)
Homo sapiens (1821)
Rattus norvegicus (231)
Arabidopsis thaliana (154)
Sus scrofa (82)
Drosophila melanogaster (81)
Danio rerio (74)
Bos taurus (67)
Gallus gallus (36)
Macaca mulatta (29)
Ovis aries (23)
Oryza sativa (21)
Caenorhabditis elegans (19)
Zea mays (19)
Oncorhynchus mykiss (18)
Salmo salar (18)
Macaca fascicularis (15)
Canis lupus familiaris (13)
Xenopus laevis (12)
Oryctolagus cuniculus (12)
Mytilus galloprovincialis (11)
Ambystoma mexicanum (10)
Triticum aestivum (10)
Glycine max (10)
Solanum lycopersicum (10)
Brachypodium distachyon (10)
Vitis vinifera (9)
mouse gut metagenome (9)
Pimephales promelas (8)
Malus domestica (7)

Repository

biostudies-arrayexpress (7601)
ENA (6965)
geo (4474)
pride (511)
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MassIVE (262)
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jPOST (91)
PeptideAtlas (65)
BioModels (52)
PanoramaPublic (26)
PAXDB (20)
dbGaP (13)
GNPS (13)
GPMDB (11)
Cell Collective (8)
EVA (5)
ExpressionAtlas (4)
LINCS (2)
FAIRDOMHub (1)

Tissue

Cell culture (63)
Others (62)
Brain (45)
Liver (32)
Heart (30)
Blood plasma (29)
Lung (25)
Kidney (23)
Epithelial cell (20)
Bone marrow (17)
Plant cell (14)
Macrophage (13)
Colon (12)
Leaf (12)
Skin (12)
Stem cell (12)
Root (11)
Spleen (11)
Fibroblast (10)
Skeletal muscle (10)
Blood serum (8)
Multipotent stem cell (8)
Pancreas (8)
Blood (7)
Breast (7)
Muscle (7)
Etiolated seedling (1)
Undifferentiated tissue culture (1)
Female Reproductive System (1)
Ovary (1)

Disease

Normal (39)
Breast cancer (15)
Parkinson's disease (4)
Rheumatoid arthritis (3)
Osteosarcoma (3)
Cancer (2)
Asthma (2)
Crohn's disease (2)
Reference (2)
Lung cancer (2)
Adenocarcinoma (2)
Ovarian cancer (2)
Benign glioma (1)
Tuberculosis (1)
Multiple sclerosis (1)
"lung disease: control, Diagnosis: non-small cell squamous cell carcinoma" (1)
Radiation-induced DNA damage (1)
Ovarian cancer patient invasive malignant (1)
XCGD (1)
Primary acute lymphoblastic leukemia (1)
Early onset preeclampsia (1)
Yersinia enterocolitica uninfected (1)
Early stage liver carcinogenesis (1)
Polycystic Lipomembranous Osteodysplasia with Sclerosing Leukoencephalopathy (1)
HIV encephalitis (1)
Uninjured (1)
High grade glioblastoma (1)
Glaucoma (1)
4T1 tumor-bearing (1)
Peripheral neuropathy (1)

Technology Type

Mass Spectrometry (511)
Mass spectrometry (181)
Mass spectrometry assay (110)
NMR spectroscopy (17)
Illumina HiSeq 2000 (8)
NMR spectroscopy assay (3)
Illumina HiSeq 2500, ILLUMINA (2)
ILLUMINA, Illumina HiSeq 2500 (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
Fluorescence imaging (2)
Fluorescence intensity (2)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 4000, ILLUMINA, Illumina HiSeq 2000 (1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
ION_TORRENT, Ion Torrent Proton (1)
ILLUMINA, Illumina HiSeq 2000, Illumina MiSeq (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Exiqon 7th generation miRCURY LNA microRNA microarray system (1)
Infinium_OmniExpress-24v1.0 (1)
Illumina Omni 2.5 (1)
IlluminaHuman HT12, IlluminaHuman AWG-6 and HT12 (1)
Illumina MiSeq, Illumina HiSeq 2500 (1)
Infinium_370k - GenomeStudio (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
Illumina Genome Analyzer II (1)

Instrument Platform

Illumina NovaSeq 6000 (152)
Illumina HiSeq 2500 (99)
Illumina HiSeq 4000 (77)
Illumina HiSeq 2000 (76)
NextSeq 500 (74)
NextSeq 550 (17)
Illumina NovaSeq X (14)
NextSeq 2000 (11)
Affymetrix GeneChip Scanner 3000 7G (9)
Illumina Genome Analyzer IIx (8)
Illumina Genome Analyzer II (7)
HiSeq X Ten (7)
Illumina MiSeq (7)
NA (6)
BGISEQ-500 (6)
Agilent G2505B scanner (5)
Scanning hardware (5)
Axon GenePix 4000B scanning hardware (5)
DNBSEQ-G400 (5)
DNBSEQ-T7 (5)
Agilent High resolution C scanner (4)
GenePix 4000B [Axon Instruments] (4)
10x Genomics Chromium Controller (4)
Illumina HiSeq 1500 (4)
Illumina HiSeq 3000 (4)
AB SOLiD 4 System (3)
GenePix Personal 4100A [Axon Instruments] (3)
418 [Affymetrix] (3)
ScanArray Express HT [PerkinElmer] (3)
ScanArray 4000XL [PerkinElmer] (3)

Publication Date

2013 (1083)
2014 (1020)
2010 (989)
2012 (938)
2015 (917)
2025 (832)
2011 (809)
2026 (750)
2024 (741)
2016 (647)
2008 (625)
2023 (580)
2022 (569)
2021 (545)
2009 (478)
2020 (474)
2007 (339)
2019 (324)
2018 (297)
2017 (282)
2006 (115)
2005 (114)
2004 (39)
2003 (7)
2002 (2)
2027 (1)

UNIPROT ID/AC

P37173 (13)
P01137 (13)
P36897 (13)
O15105 (12)
Q13485 (12)
Q15796 (12)
O95257 (1)
P24522 (1)
O75293 (1)
Q969J5 (1)
Q08334 (1)
P52294 (1)
Q9GZX6 (1)
Q8N6P7 (1)
P38889 (1)
Q9C5U0 (1)
Q06124 (1)
P30560 (1)
P29995 (1)
P10145 (1)
Q00987 (1)
P08887 (1)
P40189 (1)
O15524 (1)
O14543 (1)
P42224 (1)
P40763 (1)
P05231 (1)
Q13315 (1)
P04637 (1)

ENSEMBL ID

ENSG00000170477 (59)
ENSG00000147251 (3)
ENSG00000247315 (3)
ENSG00000204131 (2)
ENSG00000229353 (2)
NewID (1)
ENSMUSG00000021039 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:16919 (42)
CHEBI:15741 (39)
CHEBI:18237 (38)
CHEBI:18012 (37)
CHEBI:28300 (33)
CHEBI:6650 (32)
CHEBI:30915 (31)
CHEBI:16761 (25)
CHEBI:17234 (23)
CHEBI:15422 (21)
CHEBI:17287 (17)
CHEBI:16991 (2)
CHEBI:71417 (1)
CHEBI:28445 (1)
CHEBI:25608 (1)
CHEBI:40595 (1)
CHEBI:60283 (1)
CHEBI:23530 (1)
CHEBI:7044 (1)
CHEBI:7861 (1)
CHEBI:13389 (1)
CHEBI:58273 (1)
CHEBI:50211 (1)
CHEBI:25523 (1)
CHEBI:26689 (1)
CHEBI:422 (1)
CHEBI:15946 (1)
CHEBI:30744 (1)
CHEBI:17138 (1)
CHEBI:4170 (1)

Metabolite Name

Hypoxanthine (56)
Creatine (54)
Taurine (53)
Inosine (48)
Choline (47)
Creatinine (46)
Adenosine (41)
Adenine (40)
Uracil (39)
Xanthine (39)
Guanosine (38)
Uridine (38)
L-Phenylalanine (37)
Glycine (36)
Phenylalanine (36)
L-Histidine (34)
Cytidine (32)
Betaine (31)
Pyroglutamic acid (31)
L-Proline (31)
Citric acid (30)
Guanine (30)
Glutamine (30)
Thymine (29)
Xanthosine (29)
Succinic acid (28)
Uric acid (28)
Glycerophosphocholine (28)
Alanine (27)
Riboflavin (27)

First Public Date

2014 (1059)
2024 (913)
2025 (897)
2026 (749)
2023 (622)
2022 (514)
2021 (510)
2020 (437)
2019 (317)
2017 (272)
2018 (242)
2015 (203)
2016 (131)
2013 (99)

Modelling Approach

Ordinary differential equation model (39)
Boolean model (3)
Partial differential equation model (2)
Physiologically based pharmacokinetic model (2)
Petri net (1)
Differential equation model (1)
Agent-based model (1)

Study status

Completed (25)
Recruiting (14)
Not provided (9)
Not yet recruiting (5)
Active, not recruiting (4)
Terminated (3)
Withdrawn (3)
Ongoing (1)
Enrolling by invitation (1)

Lab affiliation

Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (6)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (6)
Chair of Proteomics and Bioanalytics Technical University of Munich Emil-Erlenmeyer-Forum 5 85354 Freising Germany (3)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences (3)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (3)
LIST-ERIN-BEAP Bascharage1 Luxembourg (3)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (3)
Burns and Trauma Research,School of Biomedical Sciences, Queensland University of Technology (2)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (2)
Cell matrix biology and regenerative medicine, School of biological sciences, University of manchester (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (2)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (2)
Discovery Proteomics Facility, University of Oxford (2)
Federal Center of Brain Research and Neurotechnologies, Federal Medico-Biological Agency, 117513 Moscow, Russia (2)
Group Leader (CRUK Career Development Fellow) (2)
Head of Proteomics (2)
Imperial College London (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Laboratoire de Spectrometrie de Masse BioOrganique (LSMBO), Universite de Strasbourg, CNRS, IPHC UMR 7178, 67087 Strasbourg, France (2)
Leibniz Institute of Plant Biochemistry Research Group Head Proteome Biology of Plant Interactions (2)
Medical Mycology Laboratory, Department of Biology, Maynooth University, Co. Kildare, Ireland. (2)
Proteomics facility manager (2)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (2)
Systems Biology Ireland, University College Dublin (2)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (2)
1 Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA 2 Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, USA 3 Morgridge Institute for Research, Madison, WI, USA 4 National Center for Quantitative Biology of Complex Systems, Madison, WI, USA (1)
1) Department of Analytical Chemistry and Biochemisty, AGH University of Krakow 2) Laboratory of Proteomics and Mass Spectrometry, Maj Institute of Pharmacology, Polish Academy of Sciences (1)
1) Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, Jena, Germany 2) Department of Microbiology and Molecular Biology, Friedrich Schiller University, Jena, Germany (1)
1. Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 2. Division of Cardiology, Department od=f Pediatrics, University of Washington, Seattle, WA (1)
1. Division of Radiation Health, 2. Department of Pharmaceutical Sciences, 3. Neurobiology & Developmental Sciences, University of Arkansas for Medical Sciences, Little Rock, AR (1)

Keyword

Irinotecan (3)
Recurrent colon cancer (3)
Recurrent rectal cancer (3)
Stage IV rectal cancer (3)
Bevacizumab (3)
Stage III rectal cancer (3)
Oxaliplatin (3)
Cetuximab (3)
Translational research (2)
First line (2)
Vaccines (2)
Stage III colon cancer (2)
Capecitabine (2)
Stage IV colon cancer (2)
Adenocarcinoma of the rectum (2)
Imipramine (1)
TACE (transarterial chemoembolization) (1)
KRAS wt (1)
Anti-angiogenetic treatment (1)
Cetuximab (1)
IP-001 (1)
Colorectal cancer, cetuximab, biomarker, prometheus (1)
TTF-NGR (1)
Vascular targeting (1)
CD13 (1)
Aminopeptidase N (1)
General anesthesia,mechanical ventilation,colectomy (1)
Intestinal NET (1)
Somatostatin analogues (1)
Tryptophan hydroxylase inhibitor (1)

IsPrivate

False (52)

Model Flag

Non Miriam (1)
Non Kinetic (1)

Submitter Keywords

TransQST (2)
Immuno-oncology (2)
Not Peer Reviewed (2)
COVID-19 (1)

Classification

bacteria (34)
fungi (5)
protozoa (2)
helminths (1)

Modification

15.994915 (2)
0.984016 (1)
227.126991 (1)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
9.030194 (1)
Not available (1)

Study type

Transcription profiling by array (5570)
RNA-seq of coding RNA (805)
Unknown experiment type (177)
ChIP-seq (175)
Methylation profiling by array (119)
RNA-seq of coding RNA from single cells (103)
RNA-seq of non coding RNA (98)
Comparative genomic hybridization by array (90)
Other (48)
ChIP-chip by tiling array (42)
Transcription profiling by RT-PCR (41)
Methylation profiling by high throughput sequencing (37)
Animal - High-throughput sequencing (28)
RNA-seq of total RNA (25)
MicroRNA profiling by array (22)
DNA-seq (20)
Transcription profiling by tiling array (19)
Genotyping by array (19)
Proteomic profiling by array (19)
Transcription profiling by SAGE (16)
Human - One-color microarray (11)
Human - High-throughput sequencing (10)
ChIP-chip by array (9)
Animal - One-color microarray (8)
RNAi profiling by array (8)
Cell line - High-throughput sequencing (7)
ATAC-seq (6)
Single nucleus RNA sequencing (6)
Human - Single-cell sequencing (4)
Cell line - One-color microarray (4)

Release Date

2022 (3810)
2021 (3383)
2023 (3379)
2025 (2959)
2024 (2875)
2020 (2816)
2019 (2184)
2015 (2035)
2016 (1999)
2014 (1945)
2018 (1927)
2017 (1746)
2013 (1669)
2012 (1463)
2010 (1342)
2011 (1249)
2008 (800)
2009 (734)
2026 (444)
2007 (422)
2006 (201)
2005 (163)
2004 (81)
2003 (36)
2002 (31)
2001 (21)
2000 (15)
1998 (15)
1999 (12)
1997 (7)

Location

United States (12)
France (8)
Australia (5)
United Kingdom (4)
Italy (4)
Taiwan (3)
China (3)
Sweden (3)
Slovenia (2)
South Korea (2)
Belgium (2)
Canada (2)
Germany (2)
Switzerland (2)
Saudi Arabia (1)
India (1)
Croatia (1)
New Zealand (1)
Singapore (1)
Denmark (1)
Puerto Rico (1)
Turkey (1)
Greece (1)
Poland (1)
Russia (1)
Spain (1)
Austria (1)
Netherlands (1)

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Response to dietary carbohydrates in European seabass (Dicentrarchus labrax) muscle tissue as revealed by NMR-based metabolomics

INTRODUCTION: Feed optimization is a key step to the environmental and economic sustainability of aquaculture, especially for carnivorous species. Plant-derived ingredients can contribute to reduce costs and nitrogenous effluents while sparing wild fish stocks. However, the metab...

2019-01-22 | MTBLS619 | MetaboLights

Transcription profiling of rat heart and adipose tissue response to aging and caloric restriction in

Sustained caloric restriction (CR) extends lifespan in animal models but the mechanism and primary tissue target(s) have not been identified. Gene expression changes with aging and CR were examined in both heart and subcutaneous white adipose tissue (WAT) of F344 male rats using AffymetrixÂ® RAE 230...

ORGANISM(S): Rattus norvegicus

2008-06-15 | E-GEOD-6718 | biostudies-arrayexpress

Response of bovine mammary tissue to experimental Staphylococcus aureus infection experiment 3.

Mastitis in dairy cattle can result from infection by a range of microorganisms but is principally caused by coliform bacteria and gram positive bacteria such as Staphylococcus aureus (S. aureus). The former species are often acquired by environmental contamination while S. aureus is particularly pr...

ORGANISM(S): Bos taurus

2010-05-20 | E-GEOD-9681 | biostudies-arrayexpress

Response of bovine mammary tissue to experimental Staphylococcus aureus infection experiment 2.

ORGANISM(S): Bos taurus

2010-05-20 | E-GEOD-9680 | biostudies-arrayexpress

Control of Inflammatory Response by Tissue Microenvironment

PRJNA1124074 | ENA

The network response to Egf is tissue-specific

PRJNA1092964 | ENA

Tissue-autonomous immune response regulates stress signalling during hypertrophy

PRJNA577845 | ENA

Control of Inflammatory Response by Tissue Microenvironment [ChIP-seq]

PRJNA1120921 | ENA

Control of Inflammatory Response by Tissue Microenvironment [ChIP-Seq]

PRJNA1124075 | ENA

The relationship between the gene expression profile in the synovium of RA patients at baseline and the clinical response to infliximab treatment

Background: Although the use of TNF inhibitors has fundamentally changed the way rheumatoid arthritis (RA) is treated, not all patients respond well. It is desirable to facilitate the identification of responding and non-responding patients prior to treatment, not only to avoid unnecessary treatment...

ORGANISM(S): Homo sapiens

2010-04-28 | E-GEOD-21537 | biostudies-arrayexpress