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Unknown (132000)
Genomics (38084)
Transcriptomics (33538)
Proteomics (5392)
Metabolomics (1001)
Methylation profiling (774)
Other (770)
Models (170)
Multiomics (92)
Clinical (83)
Genomic (66)
Flow cytometry (1)

Organisms

Homo sapiens (17264)
Mus musculus (13326)
Drosophila melanogaster (1817)
Rattus norvegicus (1698)
Arabidopsis thaliana (1302)
Sus scrofa (480)
Danio rerio (441)
Bos taurus (386)
Gallus gallus (375)
Caenorhabditis elegans (318)
Zea mays (247)
Oryza sativa (233)
Macaca mulatta (175)
Canis lupus familiaris (152)
Ovis aries (134)
Triticum aestivum (111)
Solanum lycopersicum (110)
Saccharomyces cerevisiae (108)
Salmo salar (105)
Glycine max (103)
Oncorhynchus mykiss (96)
Solanum tuberosum (84)
Hordeum vulgare (76)
Rattus rattus (59)
Saccharum officinarum (14)
Mammalia (7)
Arabidopsis (6)
Mus sp. (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 (1)
Drosophila (1)

Organisms

Homo sapiens (8430)
Mus musculus (8340)
Rattus norvegicus (760)
Arabidopsis thaliana (476)
Drosophila melanogaster (350)
Panicum hallii (262)
Sus scrofa (254)
Danio rerio (242)
Oryza sativa (223)
Gallus gallus (211)
Bos taurus (210)
Zea mays (110)
Caenorhabditis elegans (103)
Ovis aries (88)
Macaca mulatta (87)
Canis lupus familiaris (78)
Solanum lycopersicum (72)
Triticum aestivum (65)
unidentified (55)
Capra hircus (52)
Glycine max (47)
Oncorhynchus mykiss (43)
Oryza sativa Japonica Group (43)
Vitis vinifera (41)
Xenopus laevis (40)
Macaca fascicularis (38)
Equus caballus (33)
Oryctolagus cuniculus (32)
Mus (32)
Sorghum bicolor (29)

Repository

ENA (32216)
biostudies-arrayexpress (22345)
geo (16982)
pride (3032)
EGA (1514)
MetaboLights (885)
MassIVE (751)
iProX (709)
PeptideAtlas (346)
jPOST (342)
BioModels (160)
PAXDB (119)
ExpressionAtlas (109)
GNPS (88)
dbGaP (66)
PanoramaPublic (56)
NODE (44)
GPMDB (30)
MetabolomicsWorkbench (25)
EVA (15)
Cell Collective (8)
FAIRDOMHub (2)

Tissue

Brain (491)
Liver (388)
Heart (241)
Lung (222)
Kidney (202)
Colon (119)
Leaf (114)
Spleen (100)
Root (89)
Testis (84)
Pancreas (67)
Ovary (55)
Lymph node (39)
Placenta (36)
Bone marrow (35)
Endosperm (10)
Skeletal muscle tissue (10)
Cerebellum (9)
Duodenum (8)
Plant embryo (8)
Stomach (8)
Adrenal gland (8)
Adipose tissue (8)
Anther (7)
Stem (7)
Small intestine (6)
Shoot (6)
Thymus (5)
Seed (5)
Pituitary gland (5)

Disease

Normal (153)
Breast cancer (106)
Hepatocellular carcinoma (14)
Pancreatic ductal adenocarcinoma (11)
None (9)
Normal (4)
Benign prostatic hyperplasia (4)
Chronic pancreatitis (2)
Papillary renal cell carcinoma (2)
Control (2)
Adrenocortical adenoma (1)
Trichuris muris infection-induced colitis (1)
Acute graft versus host disease (1)
Hyperthyroid (1)
Chronic DSS-induced colitis (1)
Acute DSS-induced colitis (1)
Cholangiocellular carcinoma (1)
Clear cell renal cell carcinoma (1)
Trinitrobenzene sulfonic acid-induced experimental colitis (1)
Active gastritis (1)
Active gastritis with low grade metaplasia (1)
Diabetes (1)
Diet induced obesity (1)
Lean control (1)
Endometrial carcinoma (1)
Adrenocortical carcinoma (1)
Clear cell renal carcinoma (1)
Chromophobe renal cell carcinoma (1)
Acinar adenocarcinoma (1)
Ductal adenocarcinoma (1)

Technology Type

Illumina HiSeq 2000 (25)
ILLUMINA, Illumina HiSeq 2000 (14)
Illumina HiSeq 2000, ILLUMINA (12)
ILLUMINA, Illumina HiSeq 2500 (9)
Illumina HiSeq 2500, ILLUMINA (7)
Illumina HiSeq 2500 (5)
ILLUMINA, NextSeq 500 (3)
Illumina HiSeq 2500, Illumina HiSeq 2000 (3)
Illumina MiSeq (3)
NextSeq 500, ILLUMINA (2)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (2)
ILLUMINA, Illumina MiSeq (2)
454 GS FLX Titanium, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA (1)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
Illumina HiSeq 4000, ILLUMINA, Illumina HiSeq 2000 (1)
Illumina MiSeq, HiSeq X Ten, NextSeq 500, Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
ION_TORRENT, Ion Torrent Proton (1)
HiSeq X Ten (ILLUMINA) (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Illumina HiSeq2000 (1)
Exiqon 7th generation miRCURY LNA microRNA microarray system (1)

Instrument Platform

Illumina NovaSeq 6000 (772)
Illumina HiSeq 2500 (430)
NextSeq 500 (392)
Illumina HiSeq 4000 (365)
Illumina HiSeq 2000 (340)
NextSeq 550 (113)
Illumina NovaSeq X (69)
NextSeq 2000 (64)
Illumina MiSeq (60)
Illumina Genome Analyzer IIx (46)
Illumina Genome Analyzer II (39)
Illumina HiSeq 1500 (34)
Scanning hardware (31)
DNBSEQ-G400 (31)
BGISEQ-500 (29)
HiSeq X Ten (29)
Illumina HiSeq 3000 (27)
N/A (24)
DNBSEQ-T7 (22)
NA (20)
GenePix 4000B [Axon Instruments] (19)
Axon GenePix 4000A scanning hardware (18)
Ion Torrent Proton (15)
Axon- GenePix4000B (14)
Illumina HiSeq 1000 (13)
MinION (12)
GenePix 4000A [Axon Instruments] (11)
418 [Affymetrix] (11)
Axon GenePix 4000B scanning hardware (11)
PromethION (10)

Publication Date

2013 (3691)
2014 (3300)
2025 (3118)
2015 (3065)
2026 (2720)
2010 (2675)
2024 (2630)
2011 (2611)
2012 (2604)
2023 (2327)
2022 (2304)
2016 (2260)
2021 (1998)
2020 (1746)
2019 (1560)
2008 (1459)
2018 (1290)
2009 (1286)
2017 (1145)
2007 (791)
2005 (392)
2006 (368)
2004 (114)
2003 (29)
2002 (8)
2027 (4)
2001 (1)

UNIPROT ID/AC

Q9EQ21 (7)
Q921I1 (7)
O00327 (5)
Q16526 (5)
O15534 (5)
Q8IV71 (4)
P56645 (4)
O15055 (4)
P42345 (3)
Q96247 (3)
P56211 (2)
Q75N73 (2)
Q6EEZ7 (2)
P54646 (2)
P06213 (2)
Q94JM3 (2)
P49677 (2)
P07321 (2)
P46939 (1)
P13349 (1)
P01160 (1)
Q02447 (1)
P43694 (1)
Q06413 (1)
P11532 (1)
Q6PJ06 (1)
P27797 (1)
P62942 (1)
P9P212 (1)
Q940Y5 (1)

ENSEMBL ID

ENSG00000170477 (222)
ENSG00000229353 (177)
ENSG00000147251 (133)
ENSG00000204131 (88)
ENSG00000247315 (77)
ENSECAG00000004960 (51)
ENSECAG00000009556 (51)
ENSECAG00000014414 (51)
ENSECAG00000021580 (51)
ENSECAG00000001810 (50)
ENSECAG00000004973 (50)
ENSECAG00000011847 (50)
ENSECAG00000019927 (50)
ENSECAG00000021499 (50)
ENSECAP00000007368 (50)
ENSECAP00000013223 (50)
ENSECAG00000006095 (49)
ENSECAG00000009752 (49)
ENSECAG00000014858 (49)
ENSECAP00000003495 (49)
ENSECAG00000000207 (48)
ENSECAG00000010481 (46)
ENSECAP00000007504 (45)
ENSECAG00000000548 (44)
ENSECAG00000012096 (44)
ENSECAG00000004201 (43)
ENSECAG00000024571 (43)
ENST00000403290 (1)
ENST00000008527 (1)
ENST00000317276 (1)

CHEBI ID

CHEBI:15428 (201)
CHEBI:17750 (170)
CHEBI:17154 (166)
CHEBI:16977 (137)
CHEBI:18050 (134)
CHEBI:16680 (131)
CHEBI:16828 (131)
CHEBI:15422 (129)
CHEBI:16870 (124)
CHEBI:17151 (107)
CHEBI:29034 (78)
CHEBI:16240 (73)
CHEBI:16946 (73)
CHEBI:16474 (73)
CHEBI:16526 (73)
CHEBI:15763 (72)
CHEBI:15927 (72)
CHEBI:1989 (72)
CHEBI:17380 (72)
CHEBI:50157 (72)
CHEBI:30249 (72)
CHEBI:15377 (72)
CHEBI:16842 (72)
CHEBI:15637 (72)
CHEBI:15641 (72)
CHEBI:15633 (72)
CHEBI:17111 (72)
CHEBI:18009 (72)
CHEBI:16134 (72)
CHEBI:16171 (71)

Metabolite Name

Hypoxanthine (160)
Creatine (159)
Inosine (143)
Taurine (141)
Uridine (141)
Adenine (138)
Creatinine (138)
Adenosine (131)
Choline (130)
Uracil (127)
Guanosine (122)
Betaine (117)
L-Phenylalanine (113)
Xanthine (109)
L-Tyrosine (109)
Guanine (108)
Cytidine (99)
L-Histidine (98)
Phenylalanine (98)
Glycine (97)
Cytosine (95)
Pantothenic acid (94)
Citric acid (92)
Riboflavin (90)
L-Threonine (88)
Glutamine (88)
Methionine (87)
Thymidine (87)
Ornithine (86)
L-Tryptophan (86)

First Public Date

2025 (4053)
2026 (4038)
2024 (3833)
2014 (3771)
2023 (2868)
2022 (2334)
2021 (2142)
2020 (2048)
2019 (1736)
2018 (1448)
2017 (1277)
2015 (1050)
2013 (801)
2016 (784)
2012 (16)
2011 (12)
2010 (5)

Modelling Approach

Ordinary differential equation model (57)
Constraint-based model (18)
Physiologically based pharmacokinetic model (5)
Delayed differential equation model (4)
Other (2)
Logical model (2)
Petri net (1)
Mathematical model (1)
Agent-based model (1)
Differential equation model (1)

Study status

Completed (28)
Recruiting (23)
Not provided (13)
Active, not recruiting (6)
Not yet recruiting (5)
Terminated (3)
Withdrawn (3)
Ongoing (2)

Lab affiliation

Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (10)
USDA-ARS (10)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (9)
College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (9)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (7)
University of Liverpool (7)
University of Vienna (7)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (6)
ETH Zurich (6)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (6)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (6)
Associate Professor of Genetics Stanford University USA (5)
CEA-Marcoule, DSV-Li2D, 30207 Bagnols-sur-Cèze, France (5)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Carnegie Mass Spectrometry Facility (5)
Cellzome, a GSK company (5)
Department of Genome Sciences University of Washington USA (5)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (5)
He JunJun (5)
Johns Hopkins University (5)
St Jude Children's Research Hospital (5)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (5)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (5)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (4)
Center for Reproductive Evolution, Biology Department, Syracuse University (4)
Fudan University (4)
Genecology Research Centre, University of the Sunshine Coast (4)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (4)

Keyword

Colonoscopy (4)
Bevacizumab (4)
Colorectal (3)
Indocyanine Green (2)
Microwave imaging (2)
Antibody (2)
Early diagnosis (2)
Inflammatory bowel disease (2)
Biopsy (2)
Cisplatin (2)
Biomarker (2)
Colorectal cancer screening (2)
Antibodies (2)
Screening Trial (1)
Acute bowel obstruction (1)
Presepsin (1)
Lipopolysaccharide-binding protein (1)
16s rRNA (1)
Post-operative complications (1)
Cisplatino Sandoz*EV 50mg 100M (1)
Fructose (1)
D-Xylose (1)
Primary Human Colorectal Tumors (1)
IRDye800 (1)
Light-CT Scanner (1)
Tumour detection (1)
Mirtoselect (1)
Somatic quantitative molecular alterations (1)
Qantitative Multiplex Pcr of Short fluorescent Fragments method (QMPSF) (1)
L19 (1)

IsPrivate

False (160)

Model Flag

Non Kinetic (75)

Submitter Keywords

Not Peer Reviewed (14)
FROG (5)
Immuno-oncology (2)
Oncology (1)
TransQST (1)
Manuscript Accepted (1)

Classification

bacteria (127)
viruses (32)
fungi (24)
helminths (14)
protozoa (5)

Modification

N6 (9)
N6-dimethyl-L-lysine (5)
Not available (5)
4-tetrahydrothiazine-3-carboxylic acid (4)
4x(15)N labeled L-arginine (4)
15.994915 (3)
2x(15)N labeled L-lysine (3)
57.021464 (3)
42.010565 (2)
+3amu) (1)
-17.026549 (1)
0.984016 (1)
4 (1)
4x(2)H labeled dimethylated residue (1)
6-dioxaoctanediamine derivatized cysteine (1)
71.037114 (1)

Study type

Transcription profiling by array (13456)
RNA-seq of coding RNA (2846)
ChIP-seq (798)
Methylation profiling by array (672)
Comparative genomic hybridization by array (659)
ChIP-chip by tiling array (511)
RNA-seq of non coding RNA (496)
RNA-seq of coding RNA from single cells (460)
Unknown experiment type (344)
Methylation profiling by high throughput sequencing (255)
Other (185)
Genotyping by array (168)
DNA-seq (148)
RNA-seq of total RNA (132)
Animal - High-throughput sequencing (123)
Transcription profiling by RT-PCR (102)
MicroRNA profiling by array (102)
Transcription profiling by tiling array (97)
ChIP-chip by array (71)
Spatial transcriptomics by high-throughput sequencing (55)
ATAC-seq (51)
Single nucleus RNA sequencing (46)
Transcription profiling by SAGE (43)
Human - High-throughput sequencing (36)
Cell line - High-throughput sequencing (35)
Animal - One-color microarray (32)
Proteomic profiling by array (32)
MicroRNA profiling by high throughput sequencing (30)
Human - One-color microarray (23)
ScATAC-seq (23)

Release Date

2022 (15798)
2021 (14424)
2023 (13350)
2025 (12607)
2020 (11698)
2024 (11308)
2019 (9055)
2018 (7689)
2016 (7364)
2015 (7284)
2017 (7047)
2014 (6694)
2013 (5938)
2012 (4677)
2011 (4189)
2010 (3950)
2009 (2337)
2008 (2325)
2026 (1956)
2007 (1343)
2006 (871)
2005 (715)
2004 (395)
2003 (284)
2002 (224)
2000 (183)
2001 (180)
1998 (164)
1999 (158)
1997 (91)

Location

United States (15)
China (10)
Italy (9)
France (8)
United Kingdom (6)
Japan (5)
Spain (4)
Singapore (2)
Denmark (2)
Germany (2)
Israel (2)
Belgium (2)
Australia (2)
Kazakhstan (1)
Bangladesh (1)
Hong Kong (1)
Norway (1)
Ireland (1)
Asia (1)
Taiwan (1)
New Zealand (1)
Mexico (1)
Sweden (1)
South Korea (1)
Brazil (1)
Canada (1)
Netherlands (1)
Austria (1)
Switzerland (1)

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Spatially-guided metabolomics profiling of heterogeneous human tumor tissues

Bulk high-resolution mass spectrometry can provide sensitive and global snapshots of metabolites involved in cancer metabolism. However, intra-tumor heterogeneity (IntraTH) convolutes the cellular origins and tumor pathologies associated with the detected metabolites, thus making the elucidation ...

2026-04-15 | MTBLS13432 | MetaboLights

Mirabegron displays anticancer effects by globally browning adipose tissues

Metabolic reprogramming in malignant cells is a hallmark of cancer that relies on augmented glycolytic metabolism to support their growth, invasion and metastasis. However, the impact of global adipose metabolism on tumor growth and the drug development by targeting adipose metabolism remain larg...

2023-11-08 | MTBLS8682 | MetaboLights

Cryogenic OrbiSIMS Localizes Semi-Volatile Molecules in Biological Tissues

OrbiSIMS is a recently developed instrument for label-free imaging of chemicals with micron spatial resolution and high mass resolution. We report a cryogenic workflow for OrbiSIMS (Cryo-OrbiSIMS) that improves chemical detection of lipids and other biomolecules in tissues. Cryo-OrbiSIMS boosts ioni...

2023-03-15 | MTBLS1873 | MetaboLights

Lipidomics of colon tissues

Pre-IBD is a transitional state between irritable bowel syndrome (IBS) and inflammatory bowel disease (IBD), in which chronic high-fat diet intake and antibiotic exposure significantly increase intestinal inflammatory susceptibility. However, the underlying mechanisms and effective therapeutic st...

2026-04-29 | MTBLS14399 | MetaboLights

DESI mass spectrometry imaging of murine tissues

DESI-MS imaging results of a murine colorectal tumour tissue, a murine jejunum tissue and a Helicobacter pylori-infected murine stomach tissue are available. Data were all obtained under negative ion mode. Corresponding H&E staining results can be found in the associated publication

2025-07-10 | MTBLS10846 | MetaboLights

Spatial metabolomics shows contrasting phosphonolipid distributions in tissues of marine bivalves

Lipids are an integral part of cellular membranes, vary between species, and allow cells to alter stiffness, permeability and curvature. Among lipids, phosphonolipids uniquely contain a phosphonate bond between carbon and phosphorous. Despite this distinctive biochemical characteristic, few model...

2022-06-26 | MTBLS2960 | MetaboLights

Transcriptomic and metabolomic data of goat ovarian and uterine tissues during sexual maturation (Ovarian data)

The ovaries and uterus are crucial reproductive organs in mammals, and their coordinated development ensures the normal development of sexual maturity and reproductive capacity. This study aimed to comprehensively capture the different physiological stages of the goat's sexual maturation by selec...

2024-05-30 | MTBLS9794 | MetaboLights

Transcriptomic and metabolomic data of goat ovarian and uterine tissues during sexual maturation (Uterine data)

2024-05-30 | MTBLS9795 | MetaboLights

Metabolomic profiling of mouse colorectal tumor tissues and fecal samples following bacterial intervention

This study investigated metabolic alterations in an AOM/DSS-induced mouse colorectal tumor model following bacterial intervention with Faecalibacterium prausnitzii and Peptostreptococcus stomatis. Targeted bile acid profiling and untargeted metabolomics were performed using LC-MS on colorectal tumor...

2026-09-24 | MTBLS15620 | MetaboLights

Cross-modal Integration of Metabolomics and Cardiac Functionality Captures Dynamic Metabotoxic Effects of Doxorubicin in Engineered Heart Tissues

Functional stem cell-derived heart models offer new avenues for preclinical, animal-free physiological assessment of drug cardiotoxicity. Yet, comprehensive molecular profiling in these models remains limited, leaving key metabolic drivers of cardiotoxicity unexplored.

Here, we leveraged an...

2025-12-07 | MTBLS13225 | MetaboLights