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ProteomicsA web-based search tool for visualizing instrument performance using the Triple Knockout (TKO) proteome standard
Multiplexing strategies are at the forefront of mass spectrometry-based proteomics, with SPS-MS3 methods becoming increasingly commonplace. A known caveat of isobaric multiplexing is interference resulting from co-isolated and co-fragmented ions that do not originate from the selected precursor of i...
ORGANISM(S): Bos taurus (Bovine) Saccharomyces cerevisiae (Baker's yeast) 
2018-12-04 | PXD011654 | Pride
Tko  interference  tmt  itraq  sps-ms3  tvt  shiny 
TranscriptomicsTet proteins in DNA demethylation and cell fate restriction
DNA methylation at 5-position of cytosine (5mC) is one of the best studied epigenetic modifications that plays important roles in diverse biological processes. Iterative oxidation of 5mC by the Ten-eleven translocation (Tet) family of proteins generates 5-hydroxymethylcytosine (5hmC), 5-formylcytosi...
ORGANISM(S): Mus musculus 
2014-09-22 | E-GEOD-56986 | biostudies-arrayexpress
ProteomicsA Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments
Isobaric labeling is a powerful strategy for quantitative mass spectrometry-based proteomic investigations. A complication of such analyses has been the co-isolation of multiple analytes of similar mass-to-charge resulting in the distortion of relative protein abundance measurements across samples. ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-10-26 | PXD008009 | Pride
Ion interference Ms standard Tmt Muiltinotch Lumos Orbitrap fusion 
ProteomicsA Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments
Isobaric labeling is a powerful strategy for quantitative mass spectrometry-based proteomic investigations. A complication of such analyses has been the co-isolation of multiple analytes of similar mass-to-charge resulting in the distortion of relative protein abundance measurements across samples. ...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2019-08-23 | MSV000084230 | MassIVE
GenomicsBulk RNAseq on WT and TKO E14 PGCLCs
Bulk RNAseq on WT and TKO E14 PGCLCs
PRJNA885459 | ENA
GenomicsSingle cell SMART RNAseq on WT and TKO E14 EpiLCs
Single cell SMART RNAseq on WT and TKO E14 EpiLCs
PRJNA885458 | ENA
UnknownWeb-Based Search Tool for Visualizing Instrument Performance Using the Triple Knockout (TKO) Proteome Standard.
Not available
S-EPMC6358484 | biostudies-literature
GenomicsLight-dependent expression profiles in WT, DKO, and TKO zebrafish
Light-dependent expression profiles in WT, DKO, and TKO zebrafish
PRJNA437293 | ENA
GenomicsComparison of bulk RNAseq results of WT and TKO E14 NPCs
Comparison of bulk RNAseq results of WT and TKO E14 NPCs
PRJNA885460 | ENA
GenomicsComparison of bulk RNAseq results of WT and TKO E14 EpiLCs
Comparison of bulk RNAseq results of WT and TKO E14 EpiLCs
PRJNA885461 | ENA
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