Tmt-quantitative proteomics

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Proteomics (1631)
Unknown (389)
Genomics (17)
Metabolomics (6)
Transcriptomics (3)
Other (3)
Multiomics (2)

Organisms

Homo sapiens (78)
Mus musculus (40)
Rattus norvegicus (7)
Yersinia pestis CO92 (7)
Rattus rattus (6)
Staphylococcus aureus (6)
Gallus gallus (4)
Oryza sativa (4)
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Bambusa pervariabilis (2)
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Nicotiana tabacum (2)
Oryctolagus cuniculus (2)
108887 (1)
Bacillus pumilus (1)
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Fusarium oxysporum f. sp. radicis-lycopersici 26381 (1)
Haloxylon ammodendron (1)
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Mus (1)
Mus sp. (1)
Pantoea rodasii (1)
Populus tomentosa (1)
Suid alphaherpesvirus 1 (1)
Triticum aestivum/Septoria tritici mixed cDNA library (1)
cellular organisms (1)

Organisms

Homo sapiens (5)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

pride (1322)
iProX (205)
MassIVE (76)
jPOST (21)
ENA (14)
PAXDB (8)
geo (5)
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GPMDB (2)
biostudies-arrayexpress (1)
GNPS (1)

Tissue

Cell culture (306)
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Blood (21)
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Disease

Breast cancer (42)
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Not Available (2)

Technology Type

Mass Spectrometry (1322)
Shotgun proteomics (943)
Bottom-up proteomics (239)
Data-dependent acquisition (163)
Affinity purification coupled with mass spectrometry proteomics (69)
Top-down proteomics (45)
SRM/MRM (16)
Gel-based experiment (12)
SWATH MS (9)
Data-independent acquisition (8)
Mass spectrometry (5)
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All-ion fragmentation (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry imaging (3)
HDMSE (2)
Glycoproteomics (1)

Instrument Platform

Orbitrap Fusion (19)
Q Exactive (15)
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Liquid Chromatography MS - negative - reverse phase (4)
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Instrument (2)
Q Exactive HF-X (2)
Illumina HiSeq 2500 (1)
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Q-Exactive (1)
Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer (1)
QExactive HFX (1)
Thermo Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer (1)
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TripleTOF 5600 (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2023 (241)
2022 (228)
2025 (203)
2021 (189)
2024 (179)
2020 (132)
2026 (119)
2019 (106)
2018 (83)
2016 (31)
2017 (29)
2015 (17)
2014 (8)
2013 (2)

UNIPROT ID/AC

1433B_HUMAN (3)
1433F_HUMAN (3)
1433G_HUMAN (3)
1433S_HUMAN (3)
1433T_HUMAN (3)
1433Z_HUMAN (3)
2A5A_HUMAN (3)
2A5B_HUMAN (3)
2A5D_HUMAN (3)
2A5E_HUMAN (3)
2A5G_HUMAN (3)
2AAA_HUMAN (3)
2AAB_HUMAN (3)
2ABA_HUMAN (3)
2ABB_HUMAN (3)
2ABD_HUMAN (3)
2ABG_HUMAN (3)
3BP1_HUMAN (3)
3BP5L_HUMAN (3)
3HAO_HUMAN (3)
3HIDH_HUMAN (3)
3MG_HUMAN (3)
41_HUMAN (3)
4EBP1_HUMAN (3)
4EBP2_HUMAN (3)
4ET_HUMAN (3)
4F2_HUMAN (3)
5HT1A_HUMAN (3)
5HT1B_HUMAN (3)
5HT2A_HUMAN (3)

CHEBI ID

CHEBI:46961 (2)
CHEBI:27570 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:15603 (2)
CHEBI:189567 (1)
CHEBI:189566 (1)
CHEBI:189565 (1)
CHEBI:189564 (1)
CHEBI:189571 (1)
CHEBI:189568 (1)
CHEBI:165589 (1)
CHEBI:165721 (1)
CHEBI:171952 (1)
CHEBI:186693 (1)
CHEBI:34719 (1)
CHEBI:3333 (1)
CHEBI:6348 (1)
CHEBI:176767 (1)
CHEBI:6649 (1)
CHEBI:176711 (1)
CHEBI:28205 (1)
CHEBI:172740 (1)
CHEBI:30802 (1)
CHEBI:168575 (1)
CHEBI:74526 (1)
CHEBI:88465 (1)
CHEBI:177449 (1)
CHEBI:17577 (1)
CHEBI:40303 (1)

Metabolite Name

Betaine (3)
Phytosphingosine (3)
Terpestacin (2)
N,N-Dimethylaniline (2)
Erucamide (2)
Trigonelline (2)
Lovastatin (2)
Canthaxanthin (2)
Styrene (2)
Acetylcholine (2)
Nicotinamide (2)
Choline (2)
Oleamide (2)
Adenosine (2)
Cytosine (2)
Testosterone (2)
Adenine (2)
Methyl Jasmonate (2)
Levetiracetam (2)
2-(6-hydroxy-6-methyloctyl)-2H-furan-5-one (1)
[3-[2-aminoethoxy(hydroxy)phosphoryl]oxy-2-[(4Z,7Z)-octadeca-4,7-dienoyl]oxypropyl] octadecanoate (1)
PS(O-18:0/12:0) (1)
PS(P-18:0/12:0) (1)
2-(1-Methylpropyl)-4,6-dinitrophenol (1)
7-Beta-Hydroxylathyrol (1)
PAF (1)
Heliocurassavicine N-Oxyde (1)
22A-Acetoxy-3-Stictanone (1)
Dl-Norleucine (1)
Desmethylenylnocardamine (1)

First Public Date

2023 (6)
2026 (3)
2025 (2)
2024 (1)
2019 (1)
2018 (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (2)
N6 (2)
Not available (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2022 (69)
2021 (63)
2023 (59)
2020 (40)
2024 (39)
2025 (36)
2019 (24)
2018 (14)
2015 (14)
2017 (9)
2016 (9)
2014 (5)
2026 (4)
2013 (2)
2010 (2)
2012 (1)

Lab affiliation

USDA-ARS (13)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (10)
Cambridge Institute for Medical Research, University of Cambridge (7)
Cornell University (7)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (7)
Cellzome (6)
Harvard Medical School (6)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. (5)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (5)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (5)
Huazhong Agricultural University (5)
Massachusetts Institute of Technology (5)
CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (4)
Department of Cell Biology, Harvard Medical School, Boston, MA, USA (4)
Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA (4)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (4)
Functional Proteomics, ICR (4)
Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia (4)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (4)
Vanderbilt University Proteomics Core (4)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (4)
Vividion Therapeutics (4)
Aarhus University, Denmark (3)
BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (3)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02215, USA (3)
Department of Molecular Biology, Princeton University, USA (3)
Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Fundación Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (3)

Tags

xref:PubMed:29807996 (1)
xref:PubMed:38942927 (1)
xref:PubMed:41827658 (1)
pathogen (1)
pathogen:bacterium (1)

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Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Integrated Proteomics and Metabolomics Analyses Revealed Potential Phospholipid-Related Biomarkers in Rabbit Atherosclerotic Plaques

BACKGROUND AND AIMS: Atherosclerosis, characterized by dysfunction of lipid metabolism and chronic inflammation, is considered as a metabolic disorder as well as a major contributor to cardiovascular diseases. However, metabolic signatures of atherosclerosis have not been well ex...

2024-09-26 | MTBLS9737 | MetaboLights

A benchmarking protocol for intact protein-level Tandem Mass Tag (TMT) labeling for quantitative top-down proteomics.

Not available

S-EPMC9587358 | biostudies-literature

Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH.

Not available

S-EPMC8154127 | biostudies-literature

TMT-based quantitative proteome data of MSP1 overexpressed rice.

Not available

S-EPMC9723919 | biostudies-literature

TMT-Based Quantitative Proteomics Analysis Reveals Airborne PM_2.5-Induced Pulmonary Fibrosis.

Not available