Tom1 - OmicsDI

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Unknown (55)
Transcriptomics (9)
Proteomics (9)
Genomics (6)
Metabolomics (1)

Organisms

Schizosaccharomyces pombe (8)
Sinorhizobium meliloti BL225C (8)
Sus scrofa domesticus (8)
Saccharomyces cerevisiae (8)
Staphylococcus aureus (8)
Rattus norvegicus (8)
Escherichia coli (8)
Methylohalobius crimeensis 10Ki (8)
Homo sapiens (8)
Shigella flexneri (8)
Allexis (8)
Shigella (8)
Zea mays (8)
Meleagris gallopavo (8)
Medicago truncatula (8)
Listeria monocytogenes (8)
Bos taurus (8)
Entamoeba histolytica HM-1:IMSS-A (8)
Solanum tuberosum (8)
Arabidopsis thaliana (8)
Leishmania major strain Friedlin (8)
Mus musculus (8)
Coprococcus sp. ART55/1 (7)
Bos indicus (7)
Periconia digitata (7)
Vicugna pacos (7)
Vicia faba var. minor (7)
Solanum lycopersicum (6)
Homo sapiens (4)
Nicotiana tabacum (1)

Organisms

Solanum lycopersicum (3)
Homo sapiens (1)

Repository

pride (8)
biostudies-arrayexpress (7)
ENA (4)
EGA (2)
geo (2)
MetaboLights (1)
PeptideAtlas (1)

Tissue

Cell suspension culture (2)
Cell culture (2)
Peripheral blood mononuclear cell (1)
Blood cell (1)
Blood (1)

Disease

Trypanosomiasis (3)
Acute leukemia (1)

Technology Type

Mass Spectrometry (8)
Bottom-up proteomics (3)
Data-dependent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
LTQ Velos (1)

Publication Date

2026 (4)
2010 (3)
2012 (2)
2007 (2)
2025 (2)
2013 (1)
2008 (1)
2024 (1)
2020 (1)
2019 (1)

UNIPROT ID/AC

E9QJD7 (1)
E9QDS4 (1)
E9QC00 (1)
E7FG27 (1)
E7FFN6 (1)
E7FEN6 (1)
E7FDW1 (1)
E7FDR8 (1)
E7FC66 (1)
E7FAR7 (1)
E7FAA3 (1)
E7F974 (1)
E7F955 (1)
E7F7B7 (1)
E7F6Y8 (1)
E7F609 (1)
E7F310 (1)
E7F1J0 (1)
E7F0W2 (1)
E7F083 (1)
E7EYZ3 (1)
E7EY57 (1)
E7EXI5 (1)
B8JMA4 (1)
B8JM83 (1)
B8JLT0 (1)
B8JL35 (1)
B8JHS7 (1)
B8A4X7 (1)
B7ZVP1 (1)

ENSEMBL ID

ENSDARP00000114848 (1)
ENSDARP00000113898 (1)
ENSDARP00000066758 (1)
ENSDARP00000028385 (1)
ENSDARG00000090746 (1)
ENSDARG00000089908 (1)
ENSDARG00000087887 (1)
ENSDARG00000079755 (1)
ENSDARG00000077764 (1)
ENSDARG00000077039 (1)
ENSDARG00000074996 (1)
ENSDARG00000070830 (1)
ENSDARG00000067760 (1)
ENSDARG00000063708 (1)
ENSDARG00000063361 (1)
ENSDARG00000062451 (1)
ENSDARG00000062401 (1)
ENSDARG00000061763 (1)
ENSDARG00000061023 (1)
ENSDARG00000060922 (1)
ENSDARG00000059804 (1)
ENSDARG00000059699 (1)
ENSDARG00000059598 (1)
ENSDARG00000057218 (1)
ENSDARG00000056519 (1)
ENSDARG00000054771 (1)
ENSDARG00000053190 (1)
ENSDARG00000052917 (1)
ENSDARG00000052565 (1)
ENSDARG00000052534 (1)

Metabolite Name

Cer(d27:1)+H (1)
CL(78:4)+H (1)
CL(78:3)+H (1)
Hex1Cer(m40:0)+Na (1)
CL(76:3)+H (1)
DG(37:4)+H (1)
CL(75:2)+H (1)
DG(25:4e)+H (1)
CL(72:4)+H (1)
TG(68:12)+NH4 (1)
TG(61:7)+NH4 (1)
CL(70:2)+H (1)
TG(57:10)+NH4 (1)
CL(69:2)+Na (1)
Cer(d38:5)+H (1)
TG(48:12)+NH4 (1)
TG(46:4)+Na (1)
TG(34:1)+NH4 (1)
TG(29:0)+NH4 (1)
SPH(t16:1)+H (1)
SPH(m22:0)+H (1)
SPH(m21:1)+H (1)
SPH(m20:0)+H (1)
SPH(d20:1)+H (1)
CL(68:2)+Na (1)
SPH(d12:0)+H (1)
PE(47:7)+Na (1)
PE(45:7)+Na (1)
PE(43:4e)+H (1)
PE(42:0e)+Na (1)

First Public Date

2014 (4)

Study type

Transcription profiling by array (6)
Other (1)

Release Date

2022 (8)
2019 (6)
2017 (5)
2013 (4)
2012 (4)
2024 (4)
2010 (3)
2023 (3)
2021 (3)
2018 (3)
2011 (3)
2007 (2)
2025 (2)
2020 (2)
2016 (2)
2009 (2)
2008 (1)
2015 (1)
2006 (1)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Biological Chemistry and Drug Discovery Unit, School of Life Sciences, University of Dundee (3)
Metabolomics and Proteomics Core, Helmholtz Center Munich, German Research Center for Environmental Health, D-80939 Munich, Germany (1)
Structural Motility, UMR 144 CNRS/Curie Institute, PSL Research University, 26 rue d’Ulm, 75258 Paris cedex 05, France (1)
Head of Protein Structure facility, Friedrich Miescher Institute for Biomedical Research (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Hematology, Oncology, Hemostaseology and Stem Cell Transplantation, RWTH Aachen University Medical School, Aachen, Germany, (1)

Tags

xref:PubMed:17704236 (1)
xref:PubMed:23373862 (1)
xref:PubMed:21593872 (1)

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Structural ubiquitin contributes to K48 linkage-specificity of the HECT ligase Tom1

Homologous to E6AP C-Terminus (HECT) ubiquitin ligases play key roles in essential pathways such as DNA repair, cell cycle control or protein quality control. Tom1 is one of five HECT ubiquitin E3 ligases in budding yeast S. cerevisiae and prototypical for a ligase with pleiotropic functions such as...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2025-08-07 | PXD062321 | Pride

Amyloid-beta impairs TOM1-mediated IL-1R1 signaling.

Not available

S-EPMC6800331 | biostudies-literature

Structure of the GAT domain of the endosomal adapter protein Tom1.

Not available

S-EPMC4781976 | biostudies-literature

TOM1 family conservation within the plant kingdom for tobacco mosaic virus accumulation.

Not available

S-EPMC10576174 | biostudies-literature

Protein Trafficking or Cell Signaling: A Dilemma for the Adaptor Protein TOM1.

Not available

S-EPMC7952518 | biostudies-literature

Identification of endocytosis related subunits in Trypanosoma brucei

Using bioinformatics, we identified TbTOM1, an ortholog of mammalian TOM1, a protein localising to endosomes. Using cryomilling and proteomics approaches we found interactor partners of TbTOM1, namely, Jerry.

ORGANISM(S): Trypanosoma brucei

2026-08-24 | PXD058738 | Pride

Trypanosoma Co-immunoprecipitation Tom1 Cryomilling Endocytosis

Dominant TOM1 mutation associated with combined immunodeficiency and autoimmune disease.

Not available

S-EPMC6597545 | biostudies-literature

A TOM1 variant impairs interaction with TOLLIP, autophagosome-lysosome fusion and regulation of innate immunity.

Not available

S-EPMC12519566 | biostudies-literature

Structure of Myosin VI/Tom1 complex reveals a cargo recognition mode of Myosin VI for tethering.

Not available

S-EPMC6673701 | biostudies-literature

TOM1, an Arabidopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein.

Not available

S-EPMC27728 | biostudies-literature

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80 Results

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