Transcriptional co-regulator

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Unknown (1238)
Transcriptomics (1204)
Genomics (921)
Proteomics (81)
Other (29)
Metabolomics (5)
Methylation profiling (4)
Models (1)

Organisms

Homo sapiens (579)
Mus musculus (540)
Arabidopsis thaliana (60)
Drosophila melanogaster (48)
Rattus norvegicus (47)
Saccharomyces cerevisiae (27)
Danio rerio (16)
Caenorhabditis elegans (12)
Schizosaccharomyces pombe (11)
Escherichia coli (8)
Candida albicans (7)
Saccharomyces cerevisiae SK1 (5)
Bacillus subtilis subsp. subtilis str. 168 (5)
Solanum lycopersicum (5)
Oryza sativa Japonica Group (5)
Streptomyces coelicolor (4)
Oryza sativa (4)
Canis lupus familiaris (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Olea europaea (2)
Aspergillus flavus (2)
Vibrio parahaemolyticus (2)
Pimephales promelas (2)
Salmonella enterica (2)
Papio hamadryas (2)
Xenopus laevis (2)
Streptomyces coelicolor A3(2) (2)
Streptococcus agalactiae (2)
Medicago truncatula (2)

Organisms

Mus musculus (227)
Homo sapiens (207)
Arabidopsis thaliana (21)
Drosophila melanogaster (14)
Saccharomyces cerevisiae (8)
Danio rerio (5)
Ciona robusta (4)
Plasmodium falciparum (4)
Candida albicans (4)
Pseudomonas aeruginosa (3)
Caulobacter vibrioides NA1000 (2)
Aspergillus fumigatus (2)
Streptococcus pyogenes (2)
Aspergillus niger (2)
Pseudomonas putida (2)
Schizosaccharomyces pombe (2)
Staphylococcus aureus (2)
Glycine max (2)
Stenotrophomonas maltophilia K279a (1)
Streptococcus sp. A12 (1)
Pestalotiopsis fici (1)
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (1)
Francisella hispaniensis (1)
Thermococcus onnurineus NA1 (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Prodigiosinella confusarubida (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Clostridium autoethanogenum (1)
Yersinia pestis (1)
Pseudomonas aeruginosa PA14 (1)

Repository

biostudies-arrayexpress (1016)
ENA (606)
geo (525)
pride (56)
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EGA (10)
iProX (8)
jPOST (6)
MetaboLights (5)
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BioModels (1)
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Tissue

Cell culture (20)
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Embryo (2)
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Flower (2)
Myeloid cell (2)
B cell (1)
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Biofilm (1)
Brain (1)
Breast (1)
Cell suspension culture (1)
Embryonic stem cell (1)
Erythrocyte (1)
Hepatocyte (1)
Kidney (1)
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MOLM-14 cell (1)
MOLM-16 cell (1)
MV-4-11 cell (1)
Neutrophil (1)
Polymorphonuclear neutrophil (1)
Prokaryotic cell (1)
Schwann cell (1)
T cell (1)
TEX cell (1)

Disease

Normal (3)
Chronic myeloid leukemia (3)
Acute leukemia (3)
Breast cancer (2)
Not Available (2)
Wild type (1)
Acute lymphocytic leukemia (1)
Breast Carcinoma (1)
Lymphoma (1)
Burkitt's lymphoma (1)
Erythroleukemia (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
Osteosarcoma (1)
Colon carcinoma (1)
None- acute control (1)
Leukemia (1)
Benign adenoma (1)
Cancer (1)
None- Acute Control (1)
N/a (1)
Osteosarcoma (1)
Glioblastoma (1)
Colorectal adenocarcinoma (1)
Hepatocellular carcinoma (1)
Neuroblastoma (1)
Acute myeloid leukemia (1)
Lymphoma (1)
Primary immunodeficiency disease (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (29)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (12)
Mass spectrometry (4)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Gel-based experiment (2)
HDMSE (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
Illumina HiSeq 2000, ILLUMINA (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (10)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 2000 (8)
NextSeq 500 (8)
Illumina Genome Analyzer II (4)
Illumina HiSeq 2500 (4)
Q Exactive HF (4)
NextSeq 2000 (3)
Illumina HiSeq 1500 (3)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
Scanning hardware (2)
NextSeq 550 (2)
Instrument (2)
Novogene in-house automated library preparation system (1)
Novogene automated library prep system (1)
Qiagen RNA extraction kit (1)
Axon GenePix4000B (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Solexa 2G Genome Analyzer (1)
Illumina iScan (1)
ScanArray scanning hardware (1)
BD FACSAria III cell sorter (1)
Agilent G2565AA and G2565BA Microarray Scanner (1)
G2565BA DNA microarray scanner [Agilent] (1)
ScanArray Express HT [PerkinElmer] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
Illumina (1)

Publication Date

2010 (139)
2012 (134)
2026 (133)
2013 (121)
2015 (110)
2014 (106)
2011 (103)
2008 (96)
2016 (84)
2025 (79)
2022 (63)
2020 (55)
2024 (54)
2023 (49)
2021 (47)
2009 (47)
2007 (44)
2019 (40)
2018 (38)
2005 (32)
2017 (26)
2006 (23)
2003 (2)
2002 (2)
2004 (1)

CHEBI ID

CHEBI:22990 (2)
CHEBI:68883 (2)
CHEBI:133172 (2)
CHEBI:91152 (2)
CHEBI:28824 (2)
CHEBI:16000 (2)
CHEBI:83058 (2)
CHEBI:28733 (2)
CHEBI:68434 (2)
CHEBI:22470 (2)
CHEBI:24298 (2)
CHEBI:26984 (2)
CHEBI:18211 (2)
CHEBI:68433 (2)
CHEBI:27693 (2)
CHEBI:17754 (2)
CHEBI:15428 (2)
CHEBI:16958 (2)
CHEBI:17964 (2)
CHEBI:24266 (2)
CHEBI:32816 (2)
CHEBI:17268 (2)
CHEBI:16634 (2)
CHEBI:17505 (2)
CHEBI:16010 (2)
CHEBI:16914 (2)
CHEBI:16335 (2)
CHEBI:16027 (2)
CHEBI:33508 (2)
CHEBI:37084 (2)

Metabolite Name

9,10-DiHOME (2)
Glutaric acid (2)
Azelaic acid (2)
Succinic acid (2)
Fumaric acid (2)
Citric acid (2)
Galactinol (2)
L-Proline (2)
1-O-((3.beta.,5.Xi.,9.Xi.,18.Xi.,19.Xi.,20.Xi.)-3-((6-Deoxyhexopyranosyl)oxy)-27-hydroxy-27,28-dioxours-12-en-28-yl)-6-O-hexopyranosylhexopyranose (1)
MCULE-7407861812 (1)
NCGC00381308-01 (1)
Ncgc00169736-02!(3r,5r)-3,4,5-tris[[(e)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy]-1-hydroxycyclohexane-1-carboxylic acid (1)
2-[2-[(E)-(Isonicotinoylhydrazono)methyl]phenoxy]acetic acid (1)
5-(4-Hydroxyphenyl)-1-[2-(4-hydroxyphenyl)ethyl]pentyl 2-O-D-apio-.beta.-D-furanosyl-.beta.-D-glucopyranoside (1)
Kaempferol 3-glucoside 7-rhamnoside (1)
CHEMBL2326941 (1)
Indigoticoside A (1)
12-Deoxyphorbol 13-laurate (1)
.beta.-Linoleoyl-.alpha.-glycerophosphorylcholine (1)
CHEBI:139416 (1)
17:0 Lyso PC (1)
Dilauroylphosphatidic acid (1)
SCHEMBL19999136 (1)
MEGxp0_001059 (1)
4-(4-(4-Hydroxy-3-methoxyphenyl)tetrahydro-1H,3H-furo[3,4-c]furan-1-yl)-2-methoxyphenyl hexopyranoside (1)
Maslic acid (1)
5-Hydroxy-1,7,7-trimethylbicyclo[2.2.1]heptan-2-yl 6-O-(3,4-dihydroxy-4-(hydroxymethyl)tetrahydrofuran-2-yl)hexopyranoside (1)
2-(4-Methylcyclohex-3-en-1-yl)propan-2-yl 6-O-(6-deoxy-.alpha.-L-mannopyranosyl)-.beta.-D-glucopyranoside (1)
23-Hydroxytormentic acid (1)
6-O-.beta.-D-Glucopyranosyl-1-O-((3.beta.,5.xi.,9.xi.)-3,19,24-trihydroxy-24,28-dioxours-12-en-28-yl)-.beta.-D-glucopyranose (1)

First Public Date

2026 (127)
2025 (64)
2024 (58)
2020 (50)
2023 (48)
2022 (48)
2014 (40)
2021 (38)
2019 (30)
2017 (29)
2018 (23)
2015 (21)
2016 (16)
2013 (14)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (10)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
1)Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), 08916 Badalona, Spain 2)Cancer and Leukemia Epigenetics and Biology Program, Josep Carreras Leukaemia Research Institute (IJC), Campus ICO-GTP-UAB, 08916 Badalona, Spain (1)
2Oncode Institute and Department of Molecular Cancer Research, Center for Molecular Medicine, University Medical Center Utrecht, 3584 CX, Utrecht, The Netherlands. (1)
Australian Institute for Bioengineering and Nanotechnolog (AIBN), The University of Queensland (1)
Brain Research Institute, University of Zurich (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Carnegie Mass Spectometry facility Carnegie Science at Stanford (1)
Chemistry Department, The Scripps Research Institute, La Jolla, California, USA (1)
Cold Spring Harbor Laboratory (1)
Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph Stelzmann Strasse 26, 50931 Cologne, Germany. (1)
Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin (1)
Department of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA. (1)
Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers-New Jersey Medical School, Newark, NJ 07103 (1)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald Germany (1)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, NIH, Bethesda, MD, USA (1)
German Cancer Research Center (DKFZ) (1)
Harvard Department of Stem Cell and Regenerative Biology Cambridge, MA 02138, USA (1)
Head of Diabetes Nestlé Institute of Health Sciences SA Campus EPFL Quartier de l'innovation, bâtiment G 1015 Lausanne (Switzerland) (1)
Head of the Antibiotic Resistance Research group Laboratory for Biology of Secondary Metabolism Institute of Microbiology BIOCEV Průmyslová 959 252 42 Vestec Czech Republic (1)
Institute for Diabetes and Cancer (IDC), Helmholtz Diabetes Center, Helmholtz Center Munich, Neuherberg, Germany (1)
Institute for Surgical Pathology, Medical Center – University of Freiburg, Faculty of Medicine, University of Freiburg, Germany (1)
Laboratory of Biochemistry Dept of Medicine University of Thessaly Biopolis 41500, Larissa Greece (1)
Laboratory of Cancer Metabolism, Department of Experimental Oncology, Maria Sklodowska-Curie National Research Institute of Oncology (1)
Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI, USA Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA (1)
Metabolism and Nutritional Program Van Andel Institute (1)
Moffitt Cancer Center (1)
Molecular Analysis - Mass Spectrometry Center for Molecular and Cellular Bioengineering (CMCB)TU Dresden Tatzberg 47/49 01307 Dresden Germany (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute Jena, Leibniz-HKI, Jena (1)
National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (18)
fungi (10)
protozoa (5)

Study type

Transcription profiling by array (634)
ChIP-seq (126)
RNA-seq of coding RNA (100)
ChIP-chip by tiling array (36)
ChIP-chip by array (24)
Unknown experiment type (22)
RNA-seq of coding RNA from single cells (11)
RNA-seq of non coding RNA (10)
Methylation profiling by array (8)
Other (7)
Comparative genomic hybridization by array (6)
Transcription profiling by tiling array (5)
RNAi profiling by array (4)
Cell line - High-throughput sequencing (3)
Methylation profiling by high throughput sequencing (3)
Genotyping by array (2)
CLIP-seq (2)
CUT&TAG (1)
Transcription profiling by SAGE (1)
Baseline (1)
Cell line - Two-color microarray (1)
One-color microarray (1)
Animal - High-throughput sequencing (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2010 (161)
2012 (160)
2013 (156)
2015 (155)
2014 (150)
2025 (142)
2011 (142)
2016 (126)
2008 (122)
2022 (104)
2021 (103)
2020 (94)
2023 (92)
2024 (86)
2019 (84)
2017 (82)
2018 (72)
2009 (71)
2007 (49)
2005 (32)
2026 (30)
2006 (27)
2003 (5)
2002 (4)
2004 (2)
2001 (1)
2000 (1)

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The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health [Array]

PRJNA1219668 | ENA

DNA interactions of transcriptional co-regulator SEUSS (SEU) during Arabidopsis flower development.

PRJNA1251669 | ENA

RcoM: a new single-component transcriptional regulator of CO metabolism in bacteria.

Not available

S-EPMC2347395 | biostudies-literature

The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health [H1644_siZMIZ1-RNAseq]

PRJNA1219663 | ENA

The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health [H1644-HiC]

PRJNA1219656 | ENA

The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health [ChIP-Seq]

PRJNA1219666 | ENA

The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health [H1644_and_THESC-RNAseq]

PRJNA1220266 | ENA

The Novel Transcriptional Co-regulator, ZMIZ1, Modulates Hormone Responses that are Essential for Optimal Endometrial Health [Mouse_uterus_V_E24-RNAseq]

PRJNA1219674 | ENA

Co-IP (AP-MS) of Connexin-43 - Gap junction protein Connexin-43 is a direct transcriptional regulator of N-cadherin in vivo

Co-IP Experiment Bait: Cx43-Flag Cell line: Hela Related Publication: Gap Junction protein Connexin-43 is a direct transcriptional regulator of N-cadherin in vivo, Maria Kotini, Elias Barriga, Jonathan Leslie, Marc Gentzel, Verena Rauschenberger, Alexandra Schambony, and Roberto Mayor

ORGANISM(S): Homo sapiens (Human)

2018-10-16 | PXD010870 | Pride

The transcriptional co-regulator LDB1 is required for brown adipose function.

Not available

S-EPMC8340307 | biostudies-literature

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3485 Results

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