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TranscriptomicsCLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex
The exon junction complex (EJC) is a central effector of mRNAs fate, linking nuclear processing to mRNA transport, translation and surveillance. Little is known about its transcriptome-wide targets. We used high-throughput sequencing after crosslinking and immunoprecipitation (HITS-CLIP) in human ce...
ORGANISM(S): Homo sapiens 
2012-10-21 | E-GEOD-40778 | biostudies-arrayexpress
TranscriptomicsTranscriptome-wide miR-155 binding map reveals widespread non-canonical microRNA targeting
This SuperSeries is composed of the following subset Series: GSE41241: Transcriptome-wide miR-155 binding map reveals widespread non-canonical microRNA targeting [mRNA expression data] GSE41285: Transcriptome-wide miR-155 binding map reveals widespread non-canonical microRNA targeting [CLIP-seq data...
ORGANISM(S): Mus musculus 
2012-11-09 | E-GEOD-41288 | biostudies-arrayexpress
TranscriptomicsIn vivo and transcriptome-wide identification of RNA-binding protein target sites
This SuperSeries is composed of the following subset Series: GSE33569: In vivo and transcriptome-wide identification of RNA-binding protein target sites [PAR-CLIP] GSE33573: In vivo and transcriptome-wide identification of RNA-binding protein target sites [RNA-Seq] Refer to individual Series
ORGANISM(S): Caenorhabditis elegans 
2011-12-09 | E-GEOD-33543 | biostudies-arrayexpress
ProteomicsTranscriptome-wide Identification of Single-stranded RNA Binding Proteins
sinle-stranded RNA binding proteins were identified using DIA MS with the asist of RNA seconderay structure specific probe
ORGANISM(S): Homo sapiens (Human) 
2023-05-10 | PXD038757 | Pride
Dia Rna Transcriptome-wide 
TranscriptomicsTranscriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
This SuperSeries is composed of the following subset Series: GSE21574: Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP: QKI data GSE21575: Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP: IGF2BP data GSE215...
ORGANISM(S): Homo sapiens 
2010-04-29 | E-GEOD-21578 | biostudies-arrayexpress
TranscriptomicsTranscriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals
Here we present complete genomic and biochemical annotations of the signals required for RNA degradation by the dsRNA specific ribonuclease III (Rnt1p) and examine its impact on transcriptome stability. Rnt1p cleavage signals are randomly distributed in the yeast genome and encompass wide variety of...
ORGANISM(S): Saccharomyces cerevisiae 
2015-02-16 | E-GEOD-57390 | biostudies-arrayexpress
TranscriptomicsTranscriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals
Here we present complete genomic and biochemical annotations of the signals required for RNA degradation by the dsRNA specific ribonuclease III (Rnt1p) and examine its impact on transcriptome stability. Rnt1p cleavage signals are randomly distributed in the yeast genome and encompass wide variety of...
ORGANISM(S): Saccharomyces cerevisiae 
2015-02-16 | E-GEOD-57448 | biostudies-arrayexpress
TranscriptomicsTranscriptome wide annotation of eukaryotic RNase III reactivity and degradation signals
Here we present complete genomic and biochemical annotations of the signals required for RNA degradation by the dsRNA specific ribonuclease III (Rnt1p) and examine its impact on transcriptome expression. Rnt1p cleavage signals are randomly distributed in the yeast genome and encompass wide variety o...
ORGANISM(S): Saccharomyces cerevisiae 
2015-02-16 | E-GEOD-57447 | biostudies-arrayexpress
TranscriptomicsELAVL1 modulates transcriptome-wide miRNA binding in murine macrophages
Post-transcriptional gene regulation by miRNAs and RNA binding proteins (RBP) is important in development, physiology and disease. To examine the interplay between miRNAs and the RBP ELAVL1 (a.k.a. HuR), we mapped miRNA binding sites on a transcriptome-wide scale in WT and Elavl1 knockout murine bon...
ORGANISM(S): Mus musculus 
2015-04-23 | E-GEOD-63199 | biostudies-arrayexpress
TranscriptomicsElucidation of Transcriptome-Wide MicroRNA Binding Sites in Human Cardiac Tissues by Ago2 HITS-CLIP
We deciphered Ago2:RNA interactions in post-mortem human heart tissues using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across...
ORGANISM(S): Homo sapiens 
2016-08-09 | E-GEOD-83410 | biostudies-arrayexpress
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