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Transcriptomicstrf4, trf5, and trf4-DADA mutant cells gene expression; Trf4p X-RIP-Chip
This SuperSeries is composed of the following subset Series: GSE16103: Wild-type versus trf4, trf5, and trf4-DADA mutant cells GSE16105: Trf4p in vivo crosslinking and ribonucleoprotein-immunopurification-chip analysis (X-RIP-Chip) Refer to individual Series
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-16107 | biostudies-arrayexpress
TranscriptomicsGenes identified by poly(A)+ transcriptome sequencing as overexpressed in trf5-Δ98-117
Purpose: To study the effects of disrupting the Trf5-Mtr4 interaction Methods: Analyzed TRF5 and trf5-Δ98-117 strains by transcriptome sequencing of poly(A)+ RNA Results: The set of most significantly affected genes included 71 that were overexpressed in trf5-Δ98-117 and only 5 that were down-regula...
ORGANISM(S): Saccharomyces cerevisiae 
2016-06-29 | GSE83827 | GEO
ProteomicsSubstrate Specificity of the TRAMP Nuclear Surveillance Complexes
During nuclear surveillance in yeast, the RNA exosome functions together with the TRAMP complexes. These include the DEAH-box RNA helicase Mtr4 together with an RNA-binding protein (Air1 or Air2) and a poly(A) polymerase (Trf4 or Trf5). To better determine how RNA substrates are targeted, we analyze...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-07-02 | PXD017114 | Pride
Trf4 Trf5 Nuclear surveillance Tramp complexes Rna-binding proteins 
TranscriptomicsGenes identified by poly(A)+ transcriptome sequencing as overexpressed in trf5-Î?98-117
Purpose: To study the effects of disrupting the Trf5-Mtr4 interaction Methods: Analyzed TRF5 and trf5-Î?98-117 strains by transcriptome sequencing of poly(A)+ RNA Results: The set of most significantly affected genes included 71 that were overexpressed in trf5-Î?98-117 and only 5 that were down-regu...
ORGANISM(S): Saccharomyces cerevisiae 
2016-06-29 | E-GEOD-83827 | biostudies-arrayexpress
UnknownA tRNA fragment, tRF5-Glu, regulates BCAR3 expression and proliferation in ovarian cancer cells.
Not available
S-EPMC5707028 | biostudies-literature
TranscriptomicsWild-type versus trf4, trf5, and trf4-DADA mutant cells
Measurement of the relative changes of gene expression of S. cerevisiae cells lacking either trf4 (trf4delta) or trf5 (trf5delta), and trf4delta/TRF4-DADA mutants compared to wild-type (WT) cells using yeast oligo microarrays that contain features representing all annotated yeast ORFs, ncRNAs, intro...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-16103 | biostudies-arrayexpress
UnknownRadiotherapy plus a self-gelation powder encapsulating tRF5-GlyGCC inhibitor potentiates natural kill cell immunity to prevent hepatocellular carcinoma recurrence.
Not available
S-EPMC11809039 | biostudies-literature
UnknownThe Importance of AGO 1 and 4 in Post-Transcriptional Gene Regulatory Function of tRF5-GluCTC, an Respiratory Syncytial Virus-Induced tRNA-Derived RNA Fragment.
Not available
S-EPMC7699471 | biostudies-literature
GenomicsSaccharomyces cerevisiae
Genes identified by poly(A)+ transcriptome sequencing as overexpressed in trf5-Δ98-117
PRJNA327115 | ENA
TranscriptomicsWild-type versus trf4, trf5, and trf4-DADA mutant cells
Measurement of the relative changes of gene expression of S. cerevisiae cells lacking either trf4 (trf4delta) or trf5 (trf5delta), and trf4delta/TRF4-DADA mutants compared to wild-type (WT) cells using yeast oligo microarrays that contain features representing all annotated yeast ORFs, ncRNAs, intro...
ORGANISM(S): Saccharomyces cerevisiae 
2009-07-15 | GSE16103 | GEO
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