Sort   by:  
 Page size 
MetabolomicsComprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection (AB SCIEX TripleTOF 6600 assay)

Data analysis represents a key challenge for untargeted metabolomics studies and it commonly requires extensive processing of more than thousands of metabolite peaks included in raw high-resolution MS data. Although a number of software packages have been developed to facilitate untargeted data p...

2019-11-19 | MTBLS736 | MetaboLights
ProteomicsSimulated spectral library searching on TripleTOF phosphopeptide datasets
Synthetic phosphopeptides and enriched K562 cell phosphopeptides were analyzed using a TripleTOF 6600 mass spectrometer before and after enzymatic dephosphorylation. Dephosphorylated peptides identified by X!Tandem database searching were subjected to spectral simulation of all possible single phosp...
ORGANISM(S): Homo Sapiens (human) 
2019-12-03 | PXD012433 | JPOST Repository
UnknownOptimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites.
Not available
S-EPMC6886777 | biostudies-literature
MetabolomicsRoot exudate metabolomics of PpPEPC1b-overexpressing rice under phosphate deficiency
Untargeted LC-MS/MS metabolomics of root exudate collection solution from wild-type rice (Oryza sativa L. Zhonghua 11) and three independent overexpression lines (OE8, OE15, OE33) of the elephant grass (Pennisetum purpureum) phosphoenolpyruvate carboxylase gene PpPEPC1b, grown under low phosphate (5...
2026-08-20 | MTBLS15387 | MetaboLights
MetabolomicsInteraction between rhizobacterial community and host root metabolism influences poplar salt tolerance

Poplar seedlings were cultivated in saline soil with low salt concentrations for 120 days, after which root tissues were harvested for untargeted metabolomic analysis. For each genotype, roots of three to four seedlings were pooled to form one biological replicate, with four biological replicates...

2026-05-15 | MTBLS14479 | MetaboLights
ProteomicsStn1 S74 phosphorylation - Telomeres, the protective ends of eukaryotic chromosomes, are replicated through concerted actions by conventional DNA polymerases and telomerase, though the regulation of this process is not fully understood
Publication abstract: Telomeres, the protective ends of eukaryotic chromosomes, are replicated through concerted actions by conventional DNA polymerases and telomerase, though the regulation of this process is not fully understood. Telomere replication requires (C)-Stn1-Ten1, a telomere ssDNA-bindin...
ORGANISM(S): Schizosaccharomyces pombe 927 
2019-02-19 | PXD011953 | Pride
Schizosaccharomyces pombe Fission yeast Telomere replication 
Proteomics20180725 Buthelezi TripleTOF FFPE of human breast tissue
Sindisiwe Buthelezi generated these "shotgun" data in July of 2018 on a SCIEX TripleTOF 6600 at the Council for Scientific and Industrial Research in Pretoria, South Africa. The twelve Information-Dependent Acquisition experiments compared one-slide-at-a-time pressure-based paraffin removal (A1-4) ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-03-15 | MSV000083581 | MassIVE
ProteomicsRed blood cells protein profile is modified in breast cancer patients
We characterized the proteomic composition of RBCs from 53 breast cancer patients (stages I-III and IV), compared with 33 healthy donors. For that, we performed two different proteomic analyses (LC-MS/MS in DDA mode-shotgun- and a SWATH-MS) using the Triple TOF 6600 technology.
ORGANISM(S): Homo sapiens (Human) 
2023-01-17 | PXD030936 | Pride
Red blood cells (rbcs)  breast cancer Metastasis 
ProteomicsProteomics analysis of Volvariella volvacea after cold treatment
The three independently grown mycelia of V. volvacea V23 or VH3 after chilling stress for 0h and 4h were used for Proteomics analysis. After tryptic digestion and iTRAQ labeling, the samples are separated into 20 components by one-dimensional chromatography, and then the NanoLC-ESI-MS/MS analysis is...
ORGANISM(S): Volvariella volvacea V23 
2020-01-28 | PXD013858 | Pride
Volvariella volvacea mycelium lc-msms 
ProteomicsTranscriptional signature in microglia associated with Aβ plaque phagocytosis
The role of microglia cells in Alzheimer’s disease (AD) is well recognized, however their molecular and functional diversity remain unclear. Here we isolated amyloid plaque-containing (using labelling with methoxy–XO4, XO4+) and non-containing (XO4-) microglia from an AD mouse model. Transcriptomics...
ORGANISM(S): Mus musculus (Mouse) 
2021-04-12 | PXD024731 | Pride
Microglia Tripletof 6600 Alzheizer's disease 
Sort   by:  
 Page size