Trujillo X X - OmicsDI

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Unknown (178)
Proteomics (16)
Genomics (7)
Transcriptomics (4)
Metabolomics (3)

Organisms

Homo sapiens (10)
Xenopus laevis (3)
Cricetulus griseus (2)
Mus musculus (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Arabidopsis thaliana (1)
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 (1)
Bacteria (1)
Drosophila melanogaster (1)
Macaca mulatta (1)
Phaseolus vulgaris (1)
Rattus norvegicus (1)
Solidesulfovibrio magneticus RS-1 (1)
Trypanosoma (1)

Repository

pride (16)
EGA (6)
biostudies-arrayexpress (5)
MetaboLights (3)

Tissue

Permanent cell line cell (4)
Brain (2)
Heart (2)
Blood (1)
Cell culture (1)
Hepatocyte (1)
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Seed (1)

Disease

Cardiovascular system disease (2)
Disease free (2)
Fatty liver disease (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (11)
Mass spectrometry (3)
Gel-based experiment (3)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Q Exactive (1)

Publication Date

2019 (4)
2016 (3)
2022 (3)
2021 (3)
2020 (3)
2026 (2)
2014 (1)
2013 (1)
2012 (1)
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2025 (1)
2018 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:14336 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15724 (2)
CHEBI:15728 (2)
CHEBI:15741 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:15999 (2)
CHEBI:16010 (2)
CHEBI:16108 (2)
CHEBI:16199 (2)
CHEBI:16244 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16359 (2)
CHEBI:16449 (2)
CHEBI:16530 (2)
CHEBI:16552 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16750 (2)
CHEBI:16755 (2)
CHEBI:16811 (2)
CHEBI:16870 (2)
CHEBI:16914 (2)

Metabolite Name

N-acetylserine (2)
1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1) (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1) (1)

Study type

Transcription profiling by array (3)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (33)
2021 (28)
2023 (20)
2024 (15)
2025 (13)
2020 (13)
2017 (11)
2015 (11)
2019 (8)
2016 (7)
2012 (6)
2014 (5)
2018 (5)
2026 (4)
2013 (2)
2011 (2)

Lab affiliation

1. Division of Radiation Health, 2. Department of Pharmaceutical Sciences, 3. Neurobiology & Developmental Sciences, University of Arkansas for Medical Sciences, Little Rock, AR (1)
1. Laboratorio de Enfermedades Parasitarias, Facultad de Ciencias Veterinarias, Universidad del Zulia, Maracaibo, Venezuela 2. Department of Biomedical Sciences, School of Medicine, University of Minnesota Duluth. 1035 University Drive, Duluth, MN, 55812 USA (1)
Departamento de Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Cd. Universitaria, Coyoacán, Ciudad de México, México (1)
Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. Morgridge Institute for Research, Madison, WI (1)
Department of Chemistry, College of Letters & Science, University of Wisconsin-Madison, Madison, WI, 53706 Department of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI, 53706 (1)
Department of Pharmacology and Toxicology, University of Arizona, AZ, USA (1)
Department of Plant and Microbial Biology, University of California, Berkeley, USA (1)
Eppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center (1)
Jennifer Van Eyk, PhD, FAHA and FISHR Director, Advanced Clinical Biosystems Research Institute Professor, Heart Institute and Department of Medicine, Director, Basic Science for the Barbra Streisand Women's Heart Center Erika Glazer Endowed Chair in Women Heart Cedars Sinai Medical Center 127 S. San Vicente Blvd. Advanced Health Science Pavilion A9307 Los Angeles, CA 90048 and Professor, Departments of Medicine and Biological Chemistry, Johns Hopkins University (1)
Jennifer Van Eyk, PhD, FAHA and FISHR Director, Advanced Clinical Biosystems Research Institute Professor, Heart Institute and Department of Medicine, Director, Basic Science for the Barbra Streisand Women's Heart Center Erika Glazer Endowed Chair in Women Heart Cedars Sinai Medical Center 127 S. San Vicente Blvd. Advanced Health Science Pavilion A9307 Los Angeles, CA 90048 and Professor, Departments of Medicine and Biological Chemistry, Johns Hopkins University Baltimore (1)
Laboratorio C036, Departamento Biología Molecular y Biotecnología, Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México (UNAM), Ciudad Universitaria, Ciudad de México, México (1)
Research Scientist (1)
Tri-Institutional Program, New York, NY, United States; Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States; Department of Pharmacology, Weill Cornell Medical College, New York, NY, United States; Department of Physiology, Biophysics and Systems Biology, Weill Cornell Medical College, New York, NY, United States (1)
nencki institute of experimental biology (1)

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RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIMÂ® genes for hereditary disorders of hearing and balance

Purpose: To identify orthologous genes in Xenopus that are implicated in deafness and vestibular disorders in humans and to compare RNA-Seq and microarray to determine the advantages of each technology for Xenopus transcriptomic analysis. Methods: Inner ear RNA from X. laevis stages 56-58 was isolat...

ORGANISM(S): Xenopus laevis

2016-02-28 | E-GEOD-69701 | biostudies-arrayexpress

Expression data from juvenile Xenopus laevis inner ear tissue

We implemented a functional genomics approach as a means to undertake a large-scale analysis of the Xenopus laevis inner ear transcriptome through microarray analysis. Microarray analysis uncovered genes within the X. laevis inner ear transcriptome associated with inner ear function and impairment i...

ORGANISM(S): Xenopus laevis

2012-05-04 | E-GEOD-37767 | biostudies-arrayexpress

Inner ear expression data from pooled inner ear tissue from stages 56,57,58 Xenopus laevis larval inner ears

The inner ear continues to grow and develop until the auditory and vestibular systems reach full maturity and all of the genes involved in this process have yet to be identified. Previous gene based analysis have primarily focused on the early developmental stages following induction and initial for...

ORGANISM(S): Xenopus laevis

2016-02-29 | E-GEOD-73829 | biostudies-arrayexpress

Nonsyndromic X-linked intellectual deficiency in three brothers with a novel MED12 missense mutation [c.5922G>T (p.Glu1974His)].

Not available

S-EPMC4527805 | biostudies-literature

Fine Breakpoint Mapping by Genome Sequencing Reveals the First Large X Inversion Disrupting the NHS Gene in a Patient with Syndromic Cataracts.

Not available

S-EPMC8657747 | biostudies-literature

High Performance of a Dominant/X-Linked Gene Panel in Patients with Neurodevelopmental Disorders.

Not available

S-EPMC10048137 | biostudies-literature

Direct mechanical thrombectomy versus bridging therapy in acute ischemic stroke: A systematic review and meta-analysis of randomized clinical trials.

Not available

S-EPMC10762454 | biostudies-literature

A Registry Study of 240 Patients with X-Linked Agammaglobulinemia Living in the USA.

Not available

S-EPMC10354121 | biostudies-literature

Prevalence of parents' non-intention to vaccinate their children and adolescents against COVID-19: A comparative analysis in Colombia and Peru.

Not available

S-EPMC9344873 | biostudies-literature

Identification of lactoylation on PHGDH

Sites of lactoylation were identified on both recominant human PHGDH and PHGDH in cellulo. For recombinant protein, sample was treated with 100 uM LGSH for 24 hours. For in cellulo, cells were transfected with PHGDH-mycDDK and treated with 50 uM MGO for lactoylLys identification.

ORGANISM(S): Homo sapiens (Human)

2026-03-09 | PXD060533 | Pride

Phgdh Serine

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208 Results

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