Tu Liu L - OmicsDI

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Unknown (1294)
Transcriptomics (63)
Proteomics (33)
Metabolomics (13)
Genomics (5)
Models (2)

Organisms

Homo sapiens (46)
Mus musculus (27)
Schizophyllum commune H4-8 (20)
Mycobacterium tuberculosis SP7 (20)
Mycobacterium tuberculosis SP10 (20)
Mycobacterium tuberculosis SP13 (20)
Mycobacterium tuberculosis SP22 (20)
Chlamydomonas reinhardtii (20)
Enterococcus mundtii CRL35 (20)
Oncorhynchus tshawytscha (20)
Pseudomonas canadensis (20)
Influenza A virus (A/California/04/2009(H1N1)) (20)
Pseudomonas aeruginosa PAO1H2O (20)
Human alphaherpesvirus 1 strain 17 (20)
Mycobacterium tuberculosis SP1 (20)
Marchantia polymorpha subsp. ruderalis (20)
Methylocystis sp. (20)
Exiguobacterium sp. SH31 (20)
Palaemonetes sp. common grass shrimp associated circular virus (20)
Amaranthus tricolor (20)
Spirochaeta sp. ELBA (20)
Clavibacter nebraskensis NCPPB 2581 (20)
Porites pukoensis (20)
Arabidopsis thaliana (3)
Brassica oleracea (1)
Listeria monocytogenes 10403S (1)
Ichthyophthirius multifiliis (1)
Bombyx mori (1)
Oryza sativa Japonica Group (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (66)
pride (20)
MetaboLights (13)
iProX (9)
Cell Collective (2)
EGA (2)
jPOST (2)
MassIVE (1)
PanoramaPublic (1)

Tissue

Cell culture (9)
Fungal cell (2)
Permanent cell line cell (2)
HEK-293 cell (1)
Embryonic stem cell (1)
Plant cell (1)
Heart (1)
Brain (1)
Testis (1)
Whole body (1)
Leaf (1)
Lung (1)

Disease

Breast cancer (2)
MFC II (1)
Laryngeal squamous cell carcinoma (1)
Fungal infectious disease (1)
Disease free (1)

Technology Type

Mass Spectrometry (20)
Mass spectrometry (12)
Shotgun proteomics (10)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000, ILLUMINA (2)
Bottom-up proteomics (2)
NMR spectroscopy (1)
Affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - hilic (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2014 (10)
2015 (9)
2026 (8)
2024 (8)
2011 (8)
2022 (8)
2016 (7)
2012 (7)
2010 (7)
2013 (6)
2025 (6)
2021 (6)
2019 (5)
2008 (4)
2020 (3)
2009 (3)
2023 (3)
2007 (1)
2006 (1)
2018 (1)

CHEBI ID

CHEBI:28875 (6)
CHEBI:16467 (6)
CHEBI:17895 (6)
CHEBI:30805 (5)
CHEBI:17748 (5)
CHEBI:15824 (5)
CHEBI:17154 (5)
CHEBI:16335 (5)
CHEBI:17568 (5)
CHEBI:15891 (5)
CHEBI:55328 (5)
CHEBI:17295 (5)
CHEBI:9410 (5)
CHEBI:28865 (5)
CHEBI:28716 (5)
CHEBI:15756 (5)
CHEBI:16871 (4)
CHEBI:75036 (4)
CHEBI:16691 (4)
CHEBI:16556 (4)
CHEBI:15799 (4)
CHEBI:545687 (4)
CHEBI:16755 (4)
CHEBI:17858 (4)
CHEBI:16525 (4)
CHEBI:15676 (4)
CHEBI:16708 (4)
CHEBI:17562 (4)
CHEBI:16977 (4)
CHEBI:28842 (4)

Metabolite Name

Uracil (6)
L-Arginine (6)
Hypoxanthine (6)
Thymine (5)
Nicotinamide (5)
Isoquinoline (5)
L-Palmitoylcarnitine (5)
Adenine (5)
Creatine (5)
L-Carnitine (5)
L-Tyrosine (5)
L-Phenylalanine (5)
Dopamine quinone (4)
5-(3-Pyridyl)-2-hydroxytetrahydrofuran (4)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (4)
3-Methylhistidine (4)
Metipranolol (4)
L-Proline (4)
Biliverdin (4)
L-Histidine (4)
Choline (4)
Oleamide (4)
Adenosine (4)
Cytosine (4)
Thymidine (4)
Bilirubin (4)
Vincristine (3)
Ambenonium (3)
5-Hydroxykynurenamine (3)
3-Carbamoyl-2-phenylpropionic acid (3)

Study type

Transcription profiling by array (42)
RNA-seq of coding RNA (12)
ChIP-seq (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (190)
2023 (177)
2022 (171)
2024 (163)
2021 (141)
2020 (107)
2019 (74)
2018 (60)
2017 (58)
2016 (46)
2015 (46)
2014 (33)
2026 (23)
2013 (17)
2011 (14)
2010 (12)
2012 (10)
2009 (6)
2008 (6)
2007 (3)
2006 (2)
2005 (1)

Lab affiliation

Proteomics facility, Central Science Laboratory, University of Tasmania (2)
National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan 430070, China (1)
Changchun Veterinary Research Institute (1)
State Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan 430079, China (1)
Department of Oncology,Mayo clinic, USA (1)
State Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan 430079, China. (1)
Joseph C. Wu, MD, PhD Director, Stanford Cardiovascular Institute Simon H. Stertzer, MD, Professor of Cardiovascular Medicine & Radiology Stanford University School of Medicine Lorry I. Lokey Stem Cell Research Building 265 Campus Drive, Rm G1120B Stanford, CA 94305-5454 Phone: (650) 736-2246 (1)
Department of Laboratory Medicine & Central Laboratory, Southern Medical University Affiliated Fengxian Hospital, China. (1)
Shanxi Key Laboratory of Otorhinolaryngology Head and Neck Cancer, Shanxi Medical University,China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China. (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Cheeloo College of Medicine, Shandong University, Jinan 250002, PR.China. Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei 230001, China. (1)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (1)
Department of Obstetrics/Gynecology, Joint Laboratory of Reproductive Medicine (SCU-CUHK), Key Laboratory of Obstetric, Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, West China Second University Hospital, Sichuan University, Chengdu 610041, China. (1)
Key Laboratory of Brain Functional Genomics of Ministry of Education, Shanghai Key Laboratory of Brain Functional Genomics, and Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai, 100021, China (1)
Department of Orthopedics, The Second Xiangya Hospital, Central South University, Changsha, China (1)
University of North Carolina at Chapel Hill (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising Germany (1)

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The Valsa Mali effector Vm1G-1794 protects the aggregated MdEF-Tu from autophagic degradation to promote infection in apple.

Not available

S-EPMC10262774 | biostudies-literature

Proteomic analysis of Viscozyme® L and its major enzyme components for pectic substrate degradation

Enzymatic degradation of plant biomass requires the coordinated action of various enzymes. In this study, the production of reducing sugars from pectic substrates and sugar beet pulp (SBP) was investigated and compared using commercial enzyme preparations, including M2, pectinase (E1) from Aspergill...

ORGANISM(S): Aspergillus aculeatus ATCC 16872

2024-04-09 | PXD045553 | Pride

New Insights into the Mechanism of Action of L-681,217, a Medicinally Promising Polyketide Inhibitor of Bacterial Protein Translation.

Not available

S-EPMC11871046 | biostudies-literature

Chloroplast Translation Elongation Factor EF-Tu/SVR11 Is Involved in var2-Mediated Leaf Variegation and Leaf Development in Arabidopsis.

Not available

S-EPMC6423176 | biostudies-literature

Effects of urotensin-II on cytokines in early acute liver failure in mice.

Not available

S-EPMC4363753 | biostudies-literature

Fibrinogen like protein-1 knockdown suppresses the proliferation and metastasis of TU-686 cells and sensitizes laryngeal cancer to LAG-3 blockade.

Not available

S-EPMC9528049 | biostudies-literature

Metabolome-based prediction of yield heterosis contributes to the breeding of elite rice

The improvement of breeding efficiencies for heterotic and climate-resilient crops can mitigate the food shortage crisis from overpopulation and climate change. Thus far, diverse molecular markers have been utilized for guiding field phenotypic selections, while the accurate predictions of complex h...

2019-12-10 | MTBLS742 | MetaboLights

Proteomic Analysis of FSCN1-Interacting Proteins in LSCC cells

Fascin actin-bundling protein 1 (FSCN1) is an evolutionarily conserved actin-bundling protein that plays a critical role in cell migration, motility, adhesion and cellular interactions. Although multiple clinical studies have implicated the expression of FSCN1 in laryngeal squamous cell carcinoma (L...

ORGANISM(S): Homo sapiens (Human)

2019-09-09 | PXD013072 | Pride

Lscc Ls-ms/ms Fscn1 Interactomics Immunoprecipitation

Down-regulation of ATF1 leads to early neuroectoderm differentiation of human embryonic stem cells by increasing the expression level of SOX2.

Not available

S-EPMC6704446 | biostudies-literature

Catalytic mechanism of S-type phycobiliprotein lyase: chaperone-like action and functional amino acid residues.

Not available

S-EPMC2794756 | biostudies-literature

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1410 Results

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