Tu W W - OmicsDI

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Unknown (3150)
Transcriptomics (1123)
Proteomics (149)
Genomics (77)
Metabolomics (10)
Models (2)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (615)
Mus musculus (449)
Drosophila melanogaster (28)
Rattus norvegicus (18)
Arabidopsis thaliana (16)
Bombyx mori (10)
Daphnia pulex (9)
Danio rerio (9)
Bos taurus (4)
Saccharomyces cerevisiae (4)
Bacillus subtilis (3)
Thermotoga maritima MSB8 (2)
Equus caballus (2)
Schizosaccharomyces pombe (2)
Murinae (1)
Cardamine flexuosa (1)
Coregonus lavaretus (1)
human metagenome (1)
Colletotrichum gloeosporioides (1)
Brassica oleracea (1)
Listeria monocytogenes 10403S (1)
Sus scrofa domesticus (1)
Bacteria (1)
Syntrichia ruralis (1)
Human herpesvirus 5 strain Towne (1)
Vibrio parahaemolyticus (1)
Capra hircus (1)
Pimephales promelas (1)
Anguilla anguilla (1)
Brassica juncea (1)

Organisms

Drosophila melanogaster (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (1196)
pride (121)
MassIVE (14)
iProX (12)
MetaboLights (10)
ENA (4)
BioModels (2)
EGA (2)
PeptideAtlas (2)
geo (1)
GPMDB (1)

Tissue

Cell culture (28)
Brain (10)
Testis (6)
Heart (5)
Epithelial cell (4)
Liver (4)
Embryonic stem cell (3)
Blood serum (3)
Cell suspension culture (3)
Whole body (3)
Spleen (3)
Leaf (3)
Lung (3)
Permanent cell line cell (3)
Fungal cell (2)
Cerebrospinal fluid (2)
Bone marrow (2)
Skeletal muscle (2)
Cell line cell (2)
Blood plasma (2)
Hepatocyte (2)
Kidney (2)
T cell (2)
Circulating cell (1)
CNS neuron (sensu Nematoda and Protostomia) (1)
Neuron of the forebrain (1)
Osteoclast (1)
Mycelium (1)
Malignant cell (1)
Thyroid gland (1)

Disease

Normal (6)
Tumor (3)
Multiple myeloma (3)
Breast cancer (3)
Acute leukemia (3)
Mammary tumor (2)
Hepatocellular carcinoma (2)
Parkinson's disease (2)
Disease free (2)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Lymphoma (1)
Erythroleukemia (1)
MFC II (1)
Colorectal cancer (1)
Colon carcinoma (1)
Tumour (1)
Colorectal carcinoma (1)
Melanoma (1)
Megakaryoblastic leukemia (1)
Reference (1)
Murine hereditary hemochromatosis (1)
Osteosarcoma (1)
Non-small cell lung carcinoma (1)
Lung cancer (1)
Adenocarcinoma (1)
Invasive ductal carcinoma (1)
Not Available (1)
Vascular myelopathy (1)
Laryngeal squamous cell carcinoma (1)
Pancreatic carcinoma (1)

Technology Type

Mass Spectrometry (121)
Shotgun proteomics (60)
Data-dependent acquisition (20)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (11)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Mass spectrometry (10)
Gel-based experiment (10)
Data-independent acquisition (6)
SWATH MS (5)
Top-down proteomics (3)
SRM/MRM (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Proteogenomics (1)
Glycoproteomics (1)
Affinity proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (28)
Illumina HiSeq 2000 (25)
NextSeq 500 (23)
Illumina HiSeq 1500 (8)
Illumina HiSeq 4000 (8)
Illumina HiSeq 2500 (6)
NextSeq 2000 (5)
NextSeq 550 (5)
Illumina MiSeq (4)
ScanArray scanning hardware (2)
G2565BA DNA microarray scanner [Agilent] (2)
BGISEQ-500 (2)
TruSeq stranded Total RNA kit (1)
Nova Seq S6000 (1)
Illumina Hi-Seq 2000 (1)
Mastercycler pro S Thermocyler (Eppendorf); 2100 Bioanalyzer (Agilent) (1)
2100 Bioanalyzer (Agilent); Axio Imager.Z2 (ZEISS) (1)
CryoStar NX70 Cryostat (Epredia) (1)
Linux (1)
Chromium Single Cell Controller (1)
BGIseq500 (1)
G2565BA DNA microarray scanner (1)
Agilent G2505B DNA microarray scanner (1)
DNA 7500 Bioanalyzer Chips (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Agilent DNA Microarray Scanner Model #G2565BA (1)
AB SOLiD 4 System (1)
GeneChip Scanner 3000 [Affymetrix] (1)
GenePix Professional 4200A [Axon Instruments] (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)

Publication Date

2013 (177)
2014 (153)
2015 (149)
2011 (132)
2012 (131)
2010 (93)
2016 (81)
2008 (65)
2009 (54)
2022 (37)
2026 (36)
2021 (36)
2025 (31)
2019 (30)
2024 (29)
2023 (22)
2018 (20)
2017 (19)
2020 (18)
2007 (16)
2006 (15)
2005 (5)
2004 (4)
2002 (1)

UNIPROT ID/AC

Q9NAP6 (2)
Q9N5G4 (2)
Q95XM2 (2)
Q8WTL2 (2)
Q7YX44 (2)
Q6A1T5 (2)
Q4W5Q7 (2)
Q4R169 (2)
Q22060 (2)
Q19108 (2)
Q17417 (2)
Q09306 (2)
Q08I41 (2)
P91567 (2)
O45698 (2)
G5ECL6 (2)
G1K0W1 (2)
D5MCV0 (2)
O45072 (2)
H2KYG0 (2)
G5ED20 (2)
Q94162 (2)
Q9N3W5 (2)
Q95Y74 (2)
Q94401 (2)
Q94241 (2)
Q23410 (2)
Q23246 (2)
Q9QX98 (1)
P70661 (1)

CHEBI ID

CHEBI:30805 (4)
CHEBI:28875 (4)
CHEBI:17568 (4)
CHEBI:16467 (4)
CHEBI:55328 (4)
CHEBI:17895 (4)
CHEBI:17431 (3)
CHEBI:15799 (3)
CHEBI:545687 (3)
CHEBI:16113 (3)
CHEBI:17562 (3)
CHEBI:17748 (3)
CHEBI:15824 (3)
CHEBI:28842 (3)
CHEBI:30746 (3)
CHEBI:16566 (3)
CHEBI:16335 (3)
CHEBI:16359 (3)
CHEBI:48131 (3)
CHEBI:32805 (3)
CHEBI:17295 (3)
CHEBI:9410 (3)
CHEBI:28865 (3)
CHEBI:28716 (3)
CHEBI:15756 (3)
CHEBI:16828 (3)
CHEBI:17687 (3)
CHEBI:46659 (2)
CHEBI:45980 (2)
CHEBI:34690 (2)

Metabolite Name

Uracil (4)
L-Arginine (4)
L-Tyrosine (4)
Thiamine monophosphate (3)
Cholic acid (3)
Adenosine (3)
L-Tryptophan (3)
Dodecanoic acid (3)
Azelaic acid (3)
Myristic acid (3)
Cytidine (3)
L-Phenylalanine (3)
PG(16:1/18:1) (2)
Laurylaldehyde (2)
(S)-3-Hydroxyhexadecanoyl-CoA (2)
Undecan-2-one (2)
Clindamycin phosphate (2)
Bupropion (2)
Myo-inositol hexakisphosphate (2)
Haloperidol (2)
Cer(d18:0/20:0) (2)
Beta-D-3-Ribofuranosyluric acid (2)
5-Methyltetrahydrofolic acid (2)
Cyclic GMP (2)
Oxytetracycline (2)
Xanthosine 5-triphosphate (2)
Cyanidin 3-glucoside (2)
Sulindac (2)
Sinensal (2)
Prenol (2)

First Public Date

2025 (1)
2024 (1)
2023 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Biotechnology, TU Delft, The Netherlands (4)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (3)
College of Biology, Hunan University, China (3)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (3)
Room 712, Institute of Biological Chemistry, Academia Sinica 128, Academia Road Sec. 2, Nankang, Taipei 115, Taiwan (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Hangzhou Medical College (2)
Molecular Genetics, TU Kaiserslautern (2)
Technical University of Munich (TUM), TUM School of Natural Sciences, Department Bioscience, Chair of Organic Chemistry II, Center for Functional Protein Assemblies (CPA), Ernst-Otto-Fischer Str. 8, Garching 85748, Germany (1)
Technical University of Munich (TUM); TUM School of Life Sciences, Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS); Gregor-Mendel-Strasse 4 85354 Freising GERMANY (1)
Department of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA (1)
Technische Universität München, Chair of Organic Chemistry,Garching, Germany (1)
Changchun Veterinary Research Institute (1)
Department of Anatomy and Cell Biology, School of Dental Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
State Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan 430079, China (1)
Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, New York, United States (1)
Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany (1)
Molecular Genetics TU Kaiserslautern Germany (1)
TU Munich, Department of Chemistry Lichtenbergstr. 4 Garching, DE 85747 (1)
Center for Integrated Protein Science at the Department of Chemistry, Technische Universität München, Garching b. München 85747, Germany; Chair of Organic Chemistry II, Technische Universität München, Garching b. München 85747, Germany (1)
Institute for Immunology, School of Medicine, Tsinghua University, Beijing, China. (1)
1 Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2 Wellcome Centre for Cell Biology, School of Biologic Sciences, University of Edinburgh, Edinburgh (1)
Core Facility for Mass Spectrometry & Proteomics Center for Molecular Biology of Heidelberg University Heidelberg, Germany (1)
State Key Laboratory of Green Pesticide, College of Chemistry, Central China Normal University, Wuhan 430079, China. (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising (1)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (1)
Technische Universität Dresden, Medizinische Fakultät Carl Gustav Carus, Institute of Physiological Chemistry, 01307 Dresden, Germany (1)
State Key Laboratory of Reproductive Medicine. Department of Histology and Embryology, Nanjing Medical University, Nanjing, China. (lab head) (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH93BF, United Kingdom ( lab head ) (1)

IsPrivate

False (2)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (820)
RNA-seq of coding RNA (135)
ChIP-seq (59)
Comparative genomic hybridization by array (44)
Methylation profiling by array (14)
RNA-seq of coding RNA from single cells (11)
DNA-seq (10)
Other (9)
RNA-seq of non coding RNA (9)
Unknown experiment type (7)
Transcription profiling by tiling array (7)
ChIP-chip by array (7)
RNAi profiling by array (6)
Transcription profiling by RT-PCR (6)
Animal - High-throughput sequencing (5)
Genotyping by array (5)
ChIP-chip by tiling array (4)
Cell line - High-throughput sequencing (4)
ATAC-seq (4)
MicroRNA profiling by array (4)
ChIP-chip by SNP array (2)
High-throughput sequencing (2)
RIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Baseline (1)
MNase-seq (1)
Cell line - Two-color microarray (1)
MicroRNA profiling by high-throughput sequencing (1)
Cell line - One-color microarray (1)

Release Date

2022 (433)
2025 (430)
2023 (401)
2021 (361)
2024 (355)
2020 (263)
2015 (243)
2013 (225)
2014 (218)
2019 (206)
2018 (183)
2016 (176)
2012 (157)
2011 (157)
2017 (141)
2010 (117)
2008 (77)
2009 (72)
2026 (67)
2007 (24)
2006 (21)
2005 (9)
2004 (6)
2003 (2)
2002 (1)
2000 (1)

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Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP availability

Due to increasing ecological concerns, recombinant microbial production of biochemicals from sustainable carbon sources like acetate is rapidly gaining importance. However, for establishing successful large-scale production scenarios, a solid understanding of metabolic driving forces is required to ...

ORGANISM(S): Escherichia coli

2024-10-17 | PXD047939 | Pride

TU-tagging: cell type specific RNA isolation from intact complex tissues

We show that the combination of spatially restricted uracil phosphoribosyltransferase (UPRT) expression with 4-thiouracil (4TU) delivery can be used to label and purify cell type specific RNA from intact complex tissues. This method is useful for isolating RNA from cell types that are difficult to i...

ORGANISM(S): Drosophila melanogaster

2010-06-19 | E-GEOD-15445 | biostudies-arrayexpress

Expression data from silkworm posterior silk glands at the late larval stages

The silkworm silk gland is one of the most efficient protein synthesis systems among all organisms. Its amazingly efficient protein synthesis makes the silk gland a desirable object for basic studies on gene expression and regulation and for biotechnological applications. At the early stages of the ...

ORGANISM(S): Bombyx mori

2012-12-05 | E-GEOD-26172 | biostudies-arrayexpress

Metabolic engineering of Escherichia coli W for isobutanol production on chemically defined medium and cheese whey as alternative raw material.

Not available

S-EPMC7728641 | biostudies-literature

Cloning and characterization of EF-Tu and EF-Ts from Pseudomonas aeruginosa.

Not available

S-EPMC3747624 | biostudies-literature

Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demand.

Not available

S-EPMC11302359 | biostudies-literature

W-doped TiO₂ nanoparticles with strong absorption in the NIR-II window for photoacoustic/CT dual-modal imaging and synergistic thermoradiotherapy of tumors.

Not available

S-EPMC6691582 | biostudies-literature

Genomewide measurements of neural-specific mRNA decay in Drosophila embryos

Neural-specific mRNA decay measurements by TU-Decay technique in control and Pumilio knockdown embryos These TU-Decay microarrays analyze mRNA levels at three timepoints: a one hour pulse, one hour chase, and three hour chase. Neural-specific RNA purification was achieved using prospero-GAL4 drivin...

ORGANISM(S): Drosophila melanogaster

2015-04-02 | E-GEOD-67512 | biostudies-arrayexpress

Environment-friendly magnetic Fe-Ce-W catalyst for the selective catalytic reduction of NO _x with NH₃: influence of citric acid content on its activity-structure relationship.

Not available

S-EPMC9081273 | biostudies-literature

Genomewide measurements of whole embryo mRNA decay in Drosophila

whole embryo (all tissues) measurement of mRNA decay by 4-thiouridine pulse-chase These TU-Decay microarrays analyze mRNA levels at three timepoints: a one hour pulse, one hour chase, and three hour chase. Measurements with or without transcription inhibition by actinomycin D (ActD) were compared.

ORGANISM(S): Drosophila melanogaster

2015-03-31 | E-GEOD-67435 | biostudies-arrayexpress

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