Turner David D - OmicsDI

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Unknown (140)
Transcriptomics (21)
Genomics (13)
Proteomics (6)
Metabolomics (3)

Organisms

Homo sapiens (17)
Mus musculus (7)
NEWT:330 (3)
Piper nigrum (3)
Methanobacterium (3)
Pseudomonas fluorescens PF5 (3)
Sulfurospirillum multivorans DSM 12446 (3)
Bothrops atrox (3)
Culter alburnus (3)
Python bivittatus (3)
'Punica granatum' phytoplasma (3)
Brucella abortus (3)
Photinus pyralis (3)
Serratia plymuthica (3)
Rahnella aquatilis (3)
Blattella germanica (3)
Acanthamoeba castellanii mimivirus (3)
Pogonomyrmex californicus (3)
Tetramorium sp. (3)
Trichuris suis (3)
Streptococcus suis SC84 (3)
Daceton armigerum (3)
Betainfluenzavirus (3)
Alphainfluenzavirus (3)
Drosophila melanogaster (2)
Mustela putorius furo (1)
Campylobacter jejuni (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (21)
EGA (11)
MassIVE (3)
MetaboLights (3)
pride (3)
geo (1)
ENA (1)

Tissue

Eye (1)
Skeletal muscle (1)

Disease

Eye disease (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (3)
Illumina (various), Illumina (Various) (1)
Gel-based experiment (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Shotgun proteomics (1)

Instrument Platform

LTQ Orbitrap Elite (2)
Q Exactive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Fluidigm C1 (1)
Linux computer (1)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
Bioanalyser (1)
Variable Atmosphere Incubator (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)

Publication Date

2013 (5)
2008 (4)
2023 (3)
2018 (2)
2014 (2)
2012 (2)
2010 (2)
2019 (2)
2017 (2)
2021 (1)
2020 (1)
2015 (1)
2011 (1)
2007 (1)
2005 (1)
2026 (1)

CHEBI ID

CHEBI:28088 (2)
CHEBI:166451 (1)
CHEBI:154179 (1)
CHEBI:44383 (1)
CHEBI:61564 (1)
CHEBI:2412 (1)
CHEBI:32159 (1)
CHEBI:882 (1)
CHEBI:131623 (1)
CHEBI:32321 (1)
CHEBI:32357 (1)
CHEBI:43980 (1)
CHEBI:59226 (1)
CHEBI:166606 (1)
CHEBI:52617 (1)
CHEBI:43983 (1)
CHEBI:15430 (1)
CHEBI:141030 (1)
CHEBI:143095 (1)
CHEBI:30833 (1)
CHEBI:36458 (1)
CHEBI:95115 (1)
CHEBI:40968 (1)
CHEBI:16285 (1)
CHEBI:165191 (1)
CHEBI:28374 (1)
CHEBI:89454 (1)
CHEBI:16388 (1)
CHEBI:85039 (1)
CHEBI:33946 (1)

Metabolite Name

7-ketocholesterol (2)
1-methylhistamine (2)
12,13-DiHOME (2)
DG(PGF1alpha/0:0/15:0) (1)
PE(PGF1alpha/22:4(7Z,10Z,13Z,16Z)) (1)
Methyl 5-(methoxymethyl)-4,5-dimethyl-2-oxofuran-3-carboxylate (1)
Nx2 toxin (1)
2-(3-hexyl-4-methyl-2,5-dioxopyrrol-1-yl)-3-hydroxybutanoic acid (1)
7-methyl-2-(4-pyrimidin-2-ylpiperazin-1-yl)-7,8-dihydro-6H-quinazolin-5-one (1)
(2R)-2-Amino-4-(amino-butyl-oxo-lambda6-sulfanylidene)butanoic acid (1)
2-((3-ethoxy-3-oxopropanoyl)oxy)-n,n,n-trimethylethan-1-aminium (1)
N-phenyl-N'-(2-{[5-(4-pyridinyl)-1,3,4-oxadiazol-2-yl]sulfanyl}acetyl)urea (1)
1,2,2,6,6-pentamethylpiperidin-4-ol (1)
Met-Gly-Tyr (1)
7-hydroxychroman-2-one (1)
N-(Cyclohexylmethyl)-3-{[5-(phenoxymethyl)-1,2-oxazol-3-yl]methyl}-3-oxetanamine (1)
2-Methyl-3-(1,4,5,6-tetrahydronicotinoyl)pyrazolo(1,5-a)pyridine (1)
Ile-Asn-Ser (1)
4-formylaminoantipyrine (1)
2-(2-hydroxy-3-methylsulfanylpropyl)-1H-pyridazine-3,6-dione (1)
Leu-Asp-Ala (1)
Glu-Lys-Ala (1)
4-chloro-N'-(6-methylpyridazin-3-yl)benzohydrazide (1)
Methyl 3-amino-4-propan-2-ylsulfonyl-5-pyrrolidin-1-ylthiophene-2-carboxylate (1)
(E)-3-phenylprop-2-enamide (1)
4-chloro-1-N-pyridin-4-ylbenzene-1,2-diamine (1)
2-[(2-hydroxy-3-methylbutanoyl)amino]-3-methylbutanoic acid (1)
Asn-Ile-Gly (1)
Lys-Ala-Ser (1)
Gly-Pro-Tyr (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (12)
Other (2)
RNA-seq of coding RNA (2)
High-throughput sequencing (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (18)
2025 (17)
2023 (17)
2024 (15)
2022 (15)
2020 (8)
2013 (8)
2018 (7)
2015 (7)
2014 (6)
2008 (6)
2009 (6)
2010 (5)
2012 (5)
2019 (5)
2011 (4)
2017 (4)
2016 (4)
2026 (2)
2007 (1)
2005 (1)

Lab affiliation

Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48201, USA (1)
Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, MD (1)
MRC - Laboratory of Molecular Biology (1)

Tags

xref:PubMed:16098828 (1)

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S-EPMC6681689 | biostudies-literature

Next-generation biomonitoring of the early-life chemical exposome in neonatal and infant development

Exposure to synthetic and natural chemicals is a major environmental risk factor in the etiology of many chronic diseases. Investigating complex co-exposures is necessary for a holistic assessment in exposome-wide association studies. In this work, a sensitive liquid chromatography-tandem mass sp...

2023-10-26 | MTBLS2442 | MetaboLights

Factors associated with D-dimer levels in HIV-infected individuals.

Not available

S-EPMC3953205 | biostudies-literature

Complex X chromosome rearrangement associated with multiorgan autoimmunity.

Not available

S-EPMC4506572 | biostudies-literature

Whole genome \"TraDIS-Xpress\" assay to determine gene roles during growth of E. coli in different concentrations of the antibiotics trimethoprim and sulfamethoxazole

To assay every gene in the E. coli genome to identify those that contribute to increased or decreased susceptibility to the antibiotics trimethoprim and sulfamethoxazole. This will help to define more accurately those bacterial cell mechanisms that contribute to these phenomena and provide informat...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2020-10-19 | E-MTAB-9305 | biostudies-arrayexpress

In Vitro Transcriptome Analysis of Cobalt Boride Nanoparticles on Human Pulmonary Alveolar Cells

In this study, we first characterized commercially available cobalt boride (Co2B) nanoparticles (NPs) using X-ray crystallography (XRD), transmission electron microscope (TEM), scanning electron microscope (SEM) and energy-dispersive X-ray spectroscopy (EDX) techniques. Next, we selected 3-(4,5-dime...

ORGANISM(S): Homo sapiens

2021-08-28 | E-MTAB-9035 | biostudies-arrayexpress

RIT1 oncoproteins escape LZTR1-mediated proteolysis

These data accompany our publication "RIT1 oncoproteins escape LZTR1-mediated proteolysis" (Castel P., et al. Science, 2019). Experiment 1: Identification of LZTR1 as an interacting partner of RIT1 Q Exactive Plus P20161208-02 FLAG GFP P20161208-03 FLAG RIT1 LTQ Orbitrap Velos ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-02-14 | MSV000083444 | MassIVE

A Proteomic Approach to Understanding the Pathogenesis of Idiopathic Macular Hole Formation

Idiopathic macular holes (IMH) are full-thickness defects of retinal tissue that cause severe vision loss due to disruption of the anatomic fovea. Abnormal vitreous traction is involved in the formation of macular holes. Both glial cells and hyalocytes contribute to epiretinal membrane formation in ...

ORGANISM(S): Homo sapiens (Human)

2018-04-11 | PXD006687 | Pride

Pemetrexed and gemcitabine as combination therapy for the treatment of Group3 medulloblastoma

We devised a high-throughput, cell-based assay to identify novel therapeutic compounds to treat Group3 medulloblastoma (G3 MB). Mouse G3 MBs, grown as neurospheres, were screened against a library of approximately 7,000 compounds including FDA-approved drugs. We identified two FDA-approved drugs, ...

ORGANISM(S): Mus musculus

2014-04-15 | E-GEOD-46406 | biostudies-arrayexpress

Evaluating Translational AI: A Two-Way Moving Target Problem.

Not available

S-EPMC12851562 | biostudies-literature

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