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Unknown (45880)
Transcriptomics (5448)
Genomics (3475)
Proteomics (701)
Metabolomics (210)
Other (54)
Multiomics (54)
Clinical (46)
Genomic (45)
Methylation profiling (9)
Models (7)

Organisms

Mus musculus (2548)
Homo sapiens (1714)
Rattus norvegicus (389)
Drosophila melanogaster (388)
Danio rerio (205)
Caenorhabditis elegans (173)
Gallus gallus (112)
Saccharomyces cerevisiae (104)
Sus scrofa (101)
Arabidopsis thaliana (91)
Bos taurus (67)
Anopheles gambiae (45)
Oncorhynchus mykiss (42)
Salmo salar (40)
Schizosaccharomyces pombe (39)
Apis mellifera (32)
Aedes aegypti (30)
Daphnia magna (29)
Ovis aries (24)
Pimephales promelas (23)
Escherichia coli (23)
Xenopus laevis (23)
Macaca mulatta (22)
Plasmodium falciparum (19)
Canis lupus familiaris (16)
Zea mays (15)
Oryza sativa (13)
Sparus aurata (11)
Gasterosteus aculeatus (11)
Mammalia (2)

Organisms

Homo sapiens (458)
Mus musculus (447)
Drosophila melanogaster (147)
Danio rerio (71)
human eye metagenome (28)
Gallus gallus (28)
Rattus norvegicus (26)
Xenopus laevis (12)
eye metagenome (7)
Anableps anableps (6)
Dugesia japonica (5)
Astyanax mexicanus (5)
Staphylococcus haemolyticus (5)
Macaca fascicularis (5)
Staphylococcus aureus (5)
human gut metagenome (5)
Zosterops lateralis (4)
Costasiella ocellifera (4)
Mythimna conigera (4)
Lacanobia oleracea (4)
Borostomias antarcticus (4)
Canis lupus familiaris (4)
Pseudomonas aeruginosa (4)
Sus scrofa (4)
Stylephorus chordatus (3)
Pomacea canaliculata (3)
Tetraodon nigroviridis (3)
Schmidtea mediterranea (3)
Chlorocebus sabaeus (3)
unidentified (3)

Repository

biostudies-arrayexpress (5922)
ENA (2089)
geo (835)
pride (299)
MassIVE (214)
MetaboLights (171)
EGA (117)
iProX (66)
PeptideAtlas (59)
dbGaP (45)
MetabolomicsWorkbench (37)
jPOST (33)
PAXDB (21)
PanoramaPublic (14)
ExpressionAtlas (13)
GPMDB (9)
EVA (7)
Cell Collective (5)
BioModels (2)
GNPS (2)
NODE (1)

Tissue

Eye (40)
Spleen (11)
Heart (10)
Liver (10)
Ovary (7)
Testis (6)
Colon (3)
Medulla oblongata (3)
Stomach (3)
Pancreas (3)
Uterus (3)
Lung (3)
Cerebellum (3)
Submandibular gland (2)
Tongue (2)
Diaphragm (2)
Zone of skin (2)
Small intestine (2)
Thymus (2)
Placenta (2)
Hippocampal formation (2)
Duodenum (2)
Epididymis (2)
Diencephalon (2)
Spinal cord (2)
Cerebral cortex (2)
Pituitary gland (2)
Vagina (2)
Prostate gland (2)
Adrenal gland (2)

Disease

Normal (27)
Retinoblastoma (6)
Cataract (6)
Apparently healthy (3)
Infected (2)
Not infected (2)
Chronic myeloid leukemia (2)
Murine hereditary hemochromatosis (2)
Osteosarcoma (2)
Adenocarcinoma (2)
Healthy (2)
Acute myeloid leukemia (2)
Fatty liver disease (1)
HIV encephalitis (1)
Acute lymphocytic leukemia (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
T. circumcincta infection (1)
Uninfected (1)
Liver cancer (1)
Dengue 2 (JAM1409) infected (1)
Diseased (1)
S. mansoni - exposed (1)
Fetal growth restriction (1)
Rett syndrome (1)
Keratoconus (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Infected with IBDV strain F52/70 (1)
Wolbachia infected (1)
None (1)
Sjogren's syndrome (1)

Technology Type

Mass Spectrometry (333)
Shotgun proteomics (158)
Mass spectrometry (83)
Bottom-up proteomics (67)
Mass spectrometry assay (65)
ESI (34)
Data-dependent acquisition (32)
Gel-based experiment (32)
Data-independent acquisition (29)
NMR spectroscopy (21)
SWATH MS (16)
Affinity purification coupled with mass spectrometry proteomics (13)
Top-down proteomics (10)
Illumina HiSeq 2000 (7)
SRM/MRM (4)
NMR spectroscopy assay (3)
NMR (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
MSE (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina (2)
Illumina HumanOmni5 (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2500 (ILLUMINA) (1)
HumanOmni1 Quad BeadChip (1)
HiSeq X Ten, ILLUMINA (1)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
EI (1)

Instrument Platform

Illumina NovaSeq 6000 (128)
Illumina HiSeq 2500 (89)
Illumina HiSeq 4000 (72)
Illumina HiSeq 2000 (71)
NextSeq 500 (52)
NextSeq 2000 (19)
Illumina MiSeq (19)
Axon GenePix 4000B scanning hardware (14)
Illumina NovaSeq X (12)
NextSeq 550 (12)
Illumina HiSeq 1500 (10)
G2565AA DNA microarray scanner [Agilent] (7)
Illumina Genome Analyzer II (7)
Scanning hardware (7)
Illumina HiSeq 1000 (7)
BGISEQ-500 (7)
NA (6)
Illumina HiSeq 3000 (6)
ScanArray 5000 [PerkinElmer] (5)
Illumina Genome Analyzer IIx (5)
HiSeq X Ten (5)
N/A (5)
Genepix (4)
Flow Cytometer (4)
Illumina (4)
Axon GenePix4000B (3)
GenePix Personal 4100A [Axon Instruments] (3)
Chemostat (3)
Axon- GenePix4000B (3)
ScanArray 4000XL [PerkinElmer] (3)

Publication Date

2013 (877)
2014 (797)
2012 (761)
2015 (750)
2010 (566)
2011 (529)
2016 (481)
2008 (320)
2025 (299)
2026 (263)
2009 (260)
2022 (231)
2023 (229)
2024 (212)
2007 (173)
2020 (164)
2021 (156)
2019 (142)
2017 (132)
2018 (129)
2006 (57)
2005 (52)
2004 (45)
2003 (11)
2001 (2)
2027 (1)

UNIPROT ID/AC

1433A_SOYBN (6)
1433B_HUMAN (6)
1433B_SOYBN (6)
1433C_SOYBN (6)
1433D_SOYBN (6)
1433F_HUMAN (6)
1433G_HUMAN (6)
1433S_HUMAN (6)
1433T_HUMAN (6)
1433Z_HUMAN (6)
3847.GLYMA01G25116.1 (6)
3847.GLYMA01G33803.1 (6)
3847.GLYMA02G01060.2 (6)
3847.GLYMA02G01170.1 (6)
3847.GLYMA02G04090.1 (6)
3847.GLYMA02G07430.1 (6)
3847.GLYMA02G24818.1 (6)
3847.GLYMA02G40806.1 (6)
3847.GLYMA03G00640.1 (6)
3847.GLYMA03G05481.1 (6)
P08646 (1)
Q504U8 (1)
P61981 (1)
P62714 (1)
P17252 (1)
P30086 (1)
Q02750 (1)
P04049 (1)
P31749 (1)
P01133 (1)

ENSEMBL ID

ENSG00000170477 (52)
ENSG00000229353 (31)
ENSG00000147251 (16)
ENSG00000247315 (12)
ENSG00000204131 (8)
ENSG00000214897 (3)
ENSG00000176092 (2)
ENSDARG00000000103 (1)
ENSDARG00000000212 (1)
ENSDARG00000000380 (1)
ENSDARG00000000638 (1)
ENSDARG00000001431 (1)
ENSDARG00000001437 (1)
ENSDARG00000001578 (1)
ENSDARG00000001788 (1)
ENSDARG00000001915 (1)
ENSDARG00000001950 (1)
ENSDARG00000001993 (1)
ENSDARG00000001994 (1)
ENSDARG00000002021 (1)
ENSDARG00000002193 (1)
ENSDARG00000002400 (1)
ENSDARG00000002414 (1)
ENSDARG00000002467 (1)
ENSDARG00000002480 (1)
ENSDARG00000002502 (1)
ENSDARG00000002549 (1)
ENSDARG00000002589 (1)
ENSDARG00000002632 (1)
ENSDARG00000002696 (1)

CHEBI ID

CHEBI:30794 (11)
CHEBI:15996 (8)
CHEBI:17552 (2)
CHEBI:114785 (1)
CHEBI:28099 (1)
CHEBI:16875 (1)
CHEBI:16675 (1)
CHEBI:17123 (1)
CHEBI:15552 (1)
CHEBI:16290 (1)
CHEBI:44074 (1)
CHEBI:48714 (1)
CHEBI:28453 (1)
CHEBI:17425 (1)
CHEBI:16978 (1)
CHEBI:15844 (1)
CHEBI:16155 (1)
CHEBI:16313 (1)
CHEBI:16176 (1)
CHEBI:15816 (1)
CHEBI:27468 (1)
CHEBI:52392 (1)
CHEBI:28116 (1)
CHEBI:8408 (1)
CHEBI:16304 (1)
CHEBI:15982 (1)
CHEBI:49268 (1)
CHEBI:18431 (1)
CHEBI:16301 (1)
CHEBI:17278 (1)

Metabolite Name

Betaine (30)
Creatine (29)
Creatinine (27)
Taurine (25)
Choline (24)
Inosine (24)
Hypoxanthine (23)
Adenosine (22)
Uracil (21)
Phenylalanine (21)
Adenine (21)
Tryptophan (21)
Glycine (20)
Tyrosine (20)
Alanine (20)
Ornithine (19)
Cytosine (19)
Glutamine (19)
Uridine (19)
Citrulline (18)
Methionine (18)
Lactate (18)
Isoleucine (18)
Guanosine (18)
Valine (17)
Serine (17)
Histamine (17)
Threonine (17)
L-Tyrosine (17)
Leucine (16)

First Public Date

2025 (282)
2014 (253)
2024 (250)
2026 (211)
2023 (202)
2022 (195)
2020 (160)
2021 (133)
2019 (90)
2017 (81)
2018 (66)
2013 (62)
2015 (60)
2016 (43)
2011 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (24)
Recruiting (10)
Not yet recruiting (5)
Not provided (3)
Active, not recruiting (2)
Terminated (1)
Withdrawn (1)

Lab affiliation

The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (8)
Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (7)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (5)
University of Miami Bascom Palmer Eye Institute (5)
Boston Children's Hospital (3)
Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (3)
Duke University Eye Center (3)
Ist. G. Gaslini (3)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (3)
Singapore Eye Research Institute (3)
1 Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Auguste-Piccard-Hof 1, 8093 Zurich, Switzerland 2 Faculty of Science, University of Zurich, Zurich, Switzerland (2)
Byers Eye Institute, Stanford University (2)
Centre for Ocular Regeneration (CORE), Prof. Brien Holden Eye Research Centre (BHERC), L V Prasad Eye Institute, Hyderabad, Telangana, India (2)
Hannover Medical School Institute for Clinical Biochemistry (OE 4340) Carl-Neuberg-Strasse 1 Building J03, Level 04, Room 1291 (Office), Room 1250 (Lab) 30625 Hannover (2)
IUSM Biochemistry and Molecular Biology, Center for Proteome Analysis, Indianapolis, IN (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (2)
Pediatric, Developmental & Genetic Ophthalmology Section AND Ophthalmis Clinical Genetics Section, Ophthalmic Genetics and Visual Function Branch, National Eye Institute Intramural Research Program, NIH, US Government (2)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (2)
University of Houston, Houston, TX 77204 (2)
University of Washington Department of Chemistry (2)
Wilmer Eye Institute, Smith Building, M015, 400 N. Broadway, Baltimore, MD 21287 (2)
1. Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong 2. Centre for Eye and Vision Research (CEVR), 17W Hong Kong Science Park, Hong Kong 3. Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University, Hong Kong (1)
1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
1. Shengli Clinical Medical College of Fujian Medical University, Fujian Provincial Hospital, Fuzhou University Affiliated Provincial Hospital, Department of Neurology, Fuzhou 350108, China 2.School of Medicine, The Chinese University of Hong Kong, Shenzhen 518172, China (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
1.Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom 2.Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany (1)
1Brunason Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; 2Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, 92697, USA; 3Department of Chemistry, University of California, Irvine, Irvine, CA, 92697, USA; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, 92697, USA (1)
1Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)

Keyword

Colonoscopy (11)
Adenomas (5)
Polyps (3)
Leucovorin (3)
Fluorouracil (3)
Miss rates (2)
Third Eye Retroscope (2)
Detection Rate (2)
NaviAid G-Eye procedure (2)
NaviAid G-Eye system (2)
G-Eye procedure (2)
G-Eye system (2)
Detection Yield (2)
Colorectal (2)
CRC (2)
Irinotecan (2)
Bevacizumab (2)
Levoleucovorin (2)
Oxaliplatin (2)
AI (1)
LST (1)
SSL (1)
UGT1A1 (1)
Fluorescence Sigmoidoscopy (1)
PDD (1)
Histologically documented (1)
G-EYE (1)
CAD-EYE (1)
Polyps classification (1)
Laryngeal (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

bacteria (34)
protozoa (2)
helminths (1)

Modification

-17.026549 (1)
-18.010565 (1)
15.9949 (1)
15.994915 (1)
42.010565 (1)
57.021464 (1)
57.0215 (1)

Study type

Transcription profiling by array (3205)
ChIP-seq (959)
RNA-seq of coding RNA (856)
Methylation profiling by high throughput sequencing (141)
RNA-seq of non coding RNA (119)
Unknown experiment type (76)
Comparative genomic hybridization by array (63)
Other (61)
ChIP-chip by tiling array (52)
RNA-seq of coding RNA from single cells (49)
Methylation profiling by array (40)
DNA-seq (39)
Animal - High-throughput sequencing (35)
ChIP-chip by array (27)
Transcription profiling by tiling array (22)
MicroRNA profiling by array (17)
RNA-seq of total RNA (16)
Transcription profiling by RT-PCR (15)
ATAC-seq (12)
Genotyping by array (10)
Proteomic profiling by array (9)
Transcription profiling by SAGE (8)
MicroRNA profiling by high throughput sequencing (8)
High-throughput sequencing (7)
Cell line - High-throughput sequencing (6)
RNAi profiling by array (6)
Animal - One-color microarray (5)
Plant - High-throughput sequencing (4)
RIP-seq (4)
Single nucleus RNA sequencing (4)

Release Date

2022 (5321)
2023 (5003)
2025 (4932)
2021 (4866)
2024 (4422)
2020 (3979)
2019 (2972)
2018 (2770)
2016 (2393)
2015 (2361)
2017 (2300)
2014 (2026)
2013 (1769)
2012 (1420)
2011 (1145)
2010 (1030)
2026 (739)
2009 (644)
2008 (606)
2007 (363)
2006 (187)
2005 (158)
2004 (123)
2003 (71)
2002 (58)
2001 (36)
2000 (36)
1999 (34)
1998 (20)
1997 (12)

Location

United States (19)
Germany (9)
Israel (5)
France (4)
Netherlands (4)
Italy (3)
India (2)
Thailand (2)
United Kingdom (2)
Japan (2)
Canada (2)
Syria (1)
Ecuador (1)
Ireland (1)
Denmark (1)
Egypt (1)
Australia (1)
Spain (1)
Belgium (1)

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Quantitative Metabolomic Dataset of Avian Eye Lenses

Metabolomics is a powerful set of methods that uses analytical techniques to identify and quantify metabolites in biological samples, providing a snapshot of the metabolic state of a biological system. In medicine, metabolomics can help diagnose diseases, reveal molecular basis of a disease, and ...

2023-06-30 | MTBLS7739 | MetaboLights

Tear lipidomics profiling reveals ocular-surface lipid remodeling associated with organelle stress in a mouse model of inflammatory dry eye disease

This study aimed to determine whether dry eye disease (DED) is accompanied by ocular-surface lipid remodeling and whether such changes converge on organelle stress–associated pathways in a mouse model of inflammatory dry eye. Tear samples were collected from mice and analyzed by LC–MS/MS–based non-t...

2026-04-04 | MTBLS14217 | MetaboLights

Tear lipidomics profiling reveals inflammatory dry eye disease-associated lipid metabolic remodeling at the ocular surface

This study aimed to investigate whether inflammatory dry eye disease (DED) is accompanied by abnormal lipid metabolic remodeling at the ocular surface. Tear samples were collected from patients with DED and matched healthy controls. Lipidomics profiling was performed using LC–MS/MS with a standardiz...

2026-04-03 | MTBLS14218 | MetaboLights

Alterations of fecal microbiota and plasma metabolome in patients with Parkinson's disease with rapid eye movement sleep disorder

Objectives: Patients with Parkinson's disease (PD) with probable Rapid eye movement sleep Behavior Disorder (RBD) (PD-RBD), a specific subtype of PD, is characterized by the presence of more severe motor and non-motor symptoms. This study aimed to elucidate the characteristics and interactions of...

2025-05-07 | MTBLS11094 | MetaboLights

A local source of insulin in the eye governed by phagocytosis and starvation

Not available

ORGANISM(S): Mus musculus

ST001897 | MetabolomicsWorkbench

Eye proteome of Drosophila melanogaster

We report the proteome composition of the Drosophila eye – a compound organ that is highly enriched in membrane proteins. The fly eye is a popular model to study the physiology of vision by means of genetic, pharmacological, and dietary interference.While the eye transcriptome and development-relate...

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2024-08-09 | PXD044845 | Pride

Transcription profiling of rat eye eQTL experiment

We used expression quantitative trait locus mapping in the laboratory rat (Rattus norvegicus) to gain a broad perspective of gene regulation in the mammalian eye and to identify genetic variation relevant to human eye disease. Of >31,000 gene probes represented on an Affymetrix expression microarray...

ORGANISM(S): Rattus norvegicus

2008-06-14 | E-GEOD-5680 | biostudies-arrayexpress

Effect of acupuncture on tear proteomics in patients with video display terminal-related dry eye

In our study, the tear proteome was compared with identify possible mechanisms and biomarkers for predicting acupuncture effectiveness in VDT-related dry eye. The results showed that the Ocular Surface Disease Index (OSDI) scores were significantly different between the acupuncture group (AC group) ...

ORGANISM(S): Homo Sapiens

2024-04-24 | PXD051759 |

RNA-Seq of eye tissues from C57BL/6J background mice at 1.5 h and 9.0 h after light onset

We report RNA-Seq experiments of whole eye tissues from C57BL/6J background mice at 1.5 h and 9.0 h after light onset to better understand photoreceptor phagocytosis Examine ocular tissue from mice at different time points

ORGANISM(S): Mus musculus

2013-08-07 | E-GEOD-48974 | biostudies-arrayexpress

Transcription profiling of Drosophila eye antennal imaginal disc expressing either activated Ras or secreted Spitz

We have used microarrays to identify genes expressed and required for the second mitotic wave (SMW) during eye development. Eye discs expressing Spitz under the control of GMR Gal4 have no SMW as Spitz promotes G1 arrest, ectopic differentiation also occures. To control for the ectopic differentiati...

ORGANISM(S): Drosophila melanogaster

2008-06-14 | E-GEOD-6300 | biostudies-arrayexpress

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