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TranscriptomicsChIP-chip analysis for H-NS binding sites in wild type and hhaydgT cells
Analysis of the distribution of the binding regions of the H-NS protein in E. coli W3110 and W3110hhaydgT mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-04 | E-MEXP-3812 | biostudies-arrayexpress
TranscriptomicsChAP-chip analysis of Hha binding regions in wild type and hnsstpA E. coli cells
The analysis of the distribution of Hha binding regions (His-Hha were expressed from pQE plasmid) on E. coli chromosome in E. coli W3110 (wild type) and hns/stpA mutant cells.
ORGANISM(S): Escherichia coli 
2013-04-02 | E-MEXP-3813 | biostudies-arrayexpress
TranscriptomicsGenome-wide expression analysis of the mouse pars tuberalis (PT) under chronic short-day and long-day conditions
Living organisms detect seasonal changes in day length (photoperiod), and alter their physiological functions accordingly, to fit seasonal environmental changes. This photoperiodic system is implicated in seasonal affective disorders and the season-associated symptoms observed in bipolar disease and...
ORGANISM(S): Mus musculus 
2010-12-02 | E-GEOD-24775 | biostudies-arrayexpress
TranscriptomicsConditional knockout of Sox2 in embryonic and trophoblast stem cells.
To compare the transcriptional networks governed by Sox2 in embryonic stem (ES) cells and trophoblast stem (TS) cells, we performed whole-genome expression analysis after tetracycline (Tet)-induced knockout of Sox2 in each cell type. A Tet-inducible Sox2 knockout ES cell line 2TS22C or its derivativ...
ORGANISM(S): Mus musculus 
2013-10-17 | E-GEOD-28451 | biostudies-arrayexpress
TranscriptomicsInduction of trophoblast stem cells from embryonic stem cells by forced repression of Oct3/4.
To characterize the transdifferentiation of embryonic stem (ES) cells into trophoblast stem (TS) cells triggered by forced repression of Oct3/4, we performed whole-genome expression analysis after tetracycline (Tet)-induced knockout of Oct3/4. A Tet-inducible Oct3/4 knockout ES cell line ZHBTc4 was ...
ORGANISM(S): Mus musculus 
2013-10-17 | E-GEOD-28452 | biostudies-arrayexpress
GenomicsDynamics of Sox2 occupancy during the differentiation of embryonic stem cells into trophoblast stem cells.
To understand the mechanism underlying the versatility in transcriptional regulation by Sox2, we compared genome-wide binding sites of Sox2 in embryonic stem (ES) cells and trophoblast stem (TS) cells by chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq). A tetracycline-...
ORGANISM(S): Mus musculus 
2013-10-17 | E-GEOD-28453 | biostudies-arrayexpress
UnknownThe level of antimicrobial resistance of sewage isolates is higher than that of river isolates in different Escherichia coli lineages.
Not available
S-EPMC7578040 | biostudies-literature
TranscriptomicsExpression Profile of Chicken Primitive Streak (HH4) Tissues
In birds and mammals, all mesoderm cells are generated from the primitive streak. Nascent mesoderm cells contain unique dorso-ventral (D/V) identities depending on their relative ingression position along the streak. Molecular mechanisms controlling this initial phase of mesoderm diversification are...
ORGANISM(S): Gallus gallus 
2010-07-29 | E-GEOD-22230 | biostudies-arrayexpress
TranscriptomicsQuartz-Seq: a simple and highly quantitative method for single-cell RNA-Seq
We report novel single-cell RNA-Seq, called Quartz-Seq. Quartz-Seq was simplified method compared with previous methods based on poly-A tailing reaction. RNA-seq by illumina TruSeq, KAPA library preparation kit, single-cell Quartz-Seq and single-cell Smart-Seq by illumina HiSeq 2000/1000
ORGANISM(S): Mus musculus 
2013-04-04 | E-GEOD-42268 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of quail MBH under short and long day conditions.
Various physiological processes and behaviours are controlled by changing daylength. To dissect genes involved in the photoperiodic changes in physiology and behaviour, global expression analysis was performed using quail kept under short and long day conditions. Experiment Overall Design: The medio...
ORGANISM(S): Coturnix japonica 
2008-11-06 | E-GEOD-8018 | biostudies-arrayexpress
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