Ultra-fast - OmicsDI

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Unknown (1023)
Proteomics (108)
Genomics (67)
Transcriptomics (42)
Metabolomics (17)
Other (4)
Methylation profiling (2)

Organisms

Mycobacterium tuberculosis SP7 (80)
Mycobacterium tuberculosis SP10 (80)
Mycobacterium tuberculosis SP13 (80)
Mycobacterium tuberculosis SP22 (80)
Chlamydomonas reinhardtii (80)
Enterococcus mundtii CRL35 (80)
Oncorhynchus tshawytscha (80)
Pseudomonas canadensis (80)
Homo sapiens (30)
Mus musculus (26)
Rattus norvegicus (4)
Candida albicans (2)
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Oncorhynchus mykiss (2)
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
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Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Mus musculus (13)
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Platax teira (2)
Oncorhynchus mykiss (2)
Homarus americanus (1)
clinical metagenome (1)
Oreochromis niloticus (1)
Arabidopsis thaliana (1)
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Repository

pride (80)
ENA (50)
biostudies-arrayexpress (37)
geo (20)
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EGA (7)
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Disease

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Acute leukemia (1)

Technology Type

Mass Spectrometry (80)
Bottom-up proteomics (35)
Data-independent acquisition (29)
Shotgun proteomics (19)
Mass spectrometry (11)
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SWATH MS (7)
Affinity purification coupled with mass spectrometry proteomics (6)
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Illumina HiSeq 2500, ILLUMINA (1)
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NMR spectroscopy (1)
Metaproteomics (1)
DiaPASEF (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 500 (8)
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Q Exactive (4)
Illumina NovaSeq 6000 (3)
DNBSEQ-T7 (2)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
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RP-HPLC-ESI-qQ-ToF mass spectrometer (1)
LTQ XL ETD (1)
ZenoTOF 7600 (1)
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Bruker Daltonics esquire 3000 (1)
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Publication Date

2026 (31)
2024 (26)
2025 (22)
2020 (16)
2021 (14)
2023 (13)
2019 (10)
2018 (8)
2015 (7)
2022 (6)
2014 (6)
2016 (5)
2017 (5)
2013 (3)
2010 (1)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:27266 (3)
CHEBI:75216 (2)
CHEBI:52031 (2)
CHEBI:83055 (2)
CHEBI:37270 (2)
CHEBI:75168 (2)
CHEBI:86256 (2)
CHEBI:131692 (2)
CHEBI:83047 (2)
CHEBI:73134 (2)
CHEBI:18237 (2)
CHEBI:28300 (2)
CHEBI:73851 (2)
CHEBI:25017 (2)
CHEBI:53487 (2)
CHEBI:28044 (2)
CHEBI:7916 (2)
CHEBI:4047 (2)
CHEBI:17712 (2)
CHEBI:64563 (2)
CHEBI:17351 (2)
CHEBI:30769 (2)
CHEBI:42320 (1)
CHEBI:75461 (1)
CHEBI:75353 (1)
CHEBI:16112|CHEBI:16384|CHEBI:75489|CHEBI:75491 (1)
CHEBI:1945|CHEBI:75499|CHEBI:75500 (1)
CHEBI:75432|CHEBI:75433 (1)
CHEBI:75559|CHEBI:75564 (1)
CHEBI:75515 (1)

Metabolite Name

Valine (3)
D-Xylose (2)
Retinyl ester (2)
Leucine (2)
Taurine (2)
Fumarate (2)
AMP (2)
Phenylalanine (2)
Tyrosine (2)
Glucose (2)
Choline (2)
Succinate (2)
Alanine (2)
Lactate (2)
Uracil (2)
Glycine (2)
Eicosapentaenoic acid (2)
L-Kynurenine (2)
Taurine (2)
2-Phenylacetamide (2)
Succinate (2)
N-acetylglutamine (2)
Isoleucine (2)
Glutamine (2)
D-Ribose (2)
Creatine (2)
L-Isoleucine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
Hypoxanthine (2)

First Public Date

2023 (10)
2019 (8)
2026 (6)
2024 (6)
2020 (6)
2025 (5)
2022 (3)
2021 (3)
2017 (2)
2014 (1)

Study type

RNA-seq of coding RNA (13)
ChIP-seq (4)
Transcription profiling by array (4)
High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of total RNA (3)
Cell line - High-throughput sequencing (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (140)
2025 (139)
2021 (134)
2024 (123)
2023 (95)
2020 (78)
2019 (67)
2018 (56)
2017 (51)
2015 (46)
2016 (39)
2014 (25)
2026 (17)
2013 (15)
2012 (10)
2011 (8)
2010 (6)
2009 (4)
2006 (2)
2008 (2)
2004 (2)
2001 (1)

Lab affiliation

Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen Copenhagen, DENMARK (7)
Administrerende Direktør • Novo Nordisk Foundation Center for Protein Research (6)
Tokyo Metropolitan Institute of Medical Science (4)
INEPCP FRCCP RAS, Moscow, Russia (4)
Executive Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program (2)
Moffitt Cancer Center (2)
Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad 121001, INDIA. (2)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Wageningen University (2)
Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad 121001, India. (1)
BMB, University of Southern Denmark (1)
Moffitt Cancer Center Tampa, FL (1)
Max Planck Institute of Biochemistry Proteomics and Signal Transduction Am Klopferspitz 18 82152 Martinsried Germanry (1)
Biomolecular Mass Spectrometry and Proteomics groups, Utrecht University (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium (1)
Professor, Deputy Head of Centre Center for Protein Research University of Copenhagen Denmark (1)
Biotechnology Department, Faculty of Biology, Adam Mickiewicz University, Umultowska Street 89, 61-614 Poznań, Poland (1)
Dr. Ivan Matic Max Planck Institute for Biology of Ageing Joseph-Stelzmann-Str. 9b 50931 Cologne, GERMANY (1)
Max Planck Institute for Biology of Ageing Joseph-Stelzmann-Str. 9b 50931 Cologne Germany (1)
IFOM, the FIRC Institute of Molecular Oncology, Milan 20139, Italy (1)
M4I Division of Imaging Mass Spectrometry, Maastricht, The Netherlands (1)
Leiden University Medical Center (1)
Jesper Velgaard Olsen, PhD Executive Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program Department of Cellular and Molecular Medicine Faculty of Health and Medical Sciences University of Copenhagen (1)
Executive Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program (1)
Tokyo Metropoitan Instituite of Medical Sciences (1)
ICAI-Indian Agricultural Research Institute, New Delhi, India (1)
Jesper Velgaard Olsen, PhD Executive Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program Department of Cellular and Molecular Medicine Faculty of Health and Medical Sciences University of Copenhagen (1)
Department of Physics and Section of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093-0374 USA (1)
Institute of Tumor Biology, University Medical Center Hamburg-Eppendorf Martinistraße 52, 20246 Hamburg, Germany (1)
Section of Molecular Physiology, Department of Nutrition, Exercise and Sports, Faculty of Science, University of Copenhagen, Copenhagen, Denmark (1)

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Acoustic Ejection Mass Spectrometry Empowers Ultra-Fast Peptide Biomarker Quantification... A Paradigm shift

There is an urgent need for increased capacity of accurate quantification of proteins to better understand health and disease. Mechanistically, higher throughput is needed to cope with biological variation; clinically the COVID-19 pandemic has underscored the critical demand for high throughput meth...

ORGANISM(S): Homo Sapiens Severe Acute Respiratory Syndrome Coronavirus 2

2024-07-02 | PXD046249 | panorama

Ultra-fast deep-learned pediatric CNS tumor classification

PRJNA996977 | ENA

Ultraplex: An ultra-fast, flexible, all-in-one fastq demultiplexer

PRJEB44738 | ENA

18 samples of Ultra Fast quantitative proteome sequencing data

Ultra Fast quantitative proteome sequencing data were performed on 18 samples of sheep ileal tissue

ORGANISM(S): Ovis Aries

PXD066963 |

FLASH: ultra-fast protocols to identify RNA-protein interactions in cells

PRJNA484982 | ENA

FLASH: ultra-fast protocols to identify RNA-protein interactions in cells

PRJNA495755 | ENA

Narrow-window DIA: Ultra-fast quantitative analysis of comprehensive proteomes with high sequencing depth. Evaluation of window width and injection time.

Mass spectrometry (MS)-based proteomics aims to characterize comprehensive proteomes in a fast and reproducible manner. Here, we present an ultra-fast scanning data-independent acquisition (DIA) strategy consisting on 2-Th precursor isolation windows, dissolving the differences between data-dependen...

ORGANISM(S): Homo sapiens (Human)

2024-02-01 | PXD046285 | Pride

Narrow-window DIA: Ultra-fast quantitative analysis of comprehensive proteomes with high sequencing depth. Dilution Series and Single Shot Gradient comparison.

ORGANISM(S): Homo sapiens (Human)

2024-02-01 | PXD046283 | Pride

Dia Astral Proteomics

A simple, fast and cost-efficient protocol for ultra-sensitive ribosome profiling

PRJNA1249502 | ENA

Near-zero-index ultra-fast pulse characterization

Not available

S-EPMC9209551 | biostudies-literature

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