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Genomics (190)
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Models (1)

Organisms

Mus musculus (75)
Homo sapiens (34)
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Nicotiana tabacum (1)
Anas platyrhynchos (1)

Organisms

Mus musculus (55)
Homo sapiens (22)
Rattus norvegicus (8)
Python regius (2)
Glycine soja (2)
Auxenochlorella pyrenoidosa (2)
Drosophila melanogaster (2)
Danio rerio (2)
Zavarzinella formosa DSM 19928 (1)
Dematophora necatrix (1)
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Pinguiococcus pyrenoidosus (1)
Phycisphaerales bacterium (1)
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Nicotiana tabacum (1)
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Populus trichocarpa (1)
Apis cerana (1)
Haemophilus influenzae (1)
Schizosaccharomyces pombe (1)
biofilm metagenome (1)
Oryctolagus cuniculus (1)
Saccharomyces cerevisiae (1)

Repository

ENA (178)
geo (115)
pride (64)
biostudies-arrayexpress (37)
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Tissue

Cell culture (11)
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Root (1)
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Saliva (1)
Sensory neuron of dorsal root ganglion (1)
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Skin (1)

Disease

Disease free (3)
3-methylglutaconic aciduria type 9 (1)
Aspergillosis (1)
Cartilage disease (1)
Ciliopathy (1)
Cryptosporidiosis (1)
Malaria (1)
Non-small cell lung carcinoma (1)
Periodontitis (1)
Pseudoxanthoma elasticum (1)

Technology Type

Mass Spectrometry (64)
Shotgun proteomics (32)
Bottom-up proteomics (20)
Data-dependent acquisition (14)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry (6)
Gel-based experiment (4)
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SWATH MS (2)
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DiaPASEF (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina NovaSeq 6000 (2)
Orbitrap Eclipse (2)
Q Exactive Plus (2)
Gas Chromatography MS - positive (2)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
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Q Exactive HF-X (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2026 (34)
2025 (32)
2023 (28)
2024 (26)
2022 (24)
2021 (19)
2015 (12)
2013 (11)
2016 (9)
2020 (9)
2019 (7)
2014 (6)
2012 (6)
2010 (5)
2017 (4)
2018 (3)
2009 (3)
2008 (2)
2011 (1)
2006 (1)
2005 (1)

UNIPROT ID/AC

P47900 (1)
Q9NQ66 (1)
P50148 (1)

CHEBI ID

CHEBI:191433 (2)
CHEBI:227 (2)
CHEBI:191619 (2)
CHEBI:191443 (2)
CHEBI:149 (2)
CHEBI:75632 (2)
CHEBI:169546 (2)
CHEBI:168761 (2)
CHEBI:168 (2)
CHEBI:69796 (2)
CHEBI:65460 (2)
CHEBI:172625 (2)
CHEBI:15389 (2)
CHEBI:75630 (2)
CHEBI:75633 (2)
CHEBI:28937 (2)
CHEBI:61993 (2)
CHEBI:50202 (2)
CHEBI:28635 (2)
CHEBI:17992 (2)
CHEBI:28527 (2)
CHEBI:67486 (2)
CHEBI:16112 (2)
CHEBI:30763 (2)
CHEBI:18211 (2)
CHEBI:16704 (2)
CHEBI:16015 (2)
CHEBI:17295 (2)
CHEBI:16914 (2)
CHEBI:30769 (2)

Metabolite Name

Uridine (3)
Sucrose (3)
Methoxyamine (2)
LPE(22:6) (2)
LPC(18:2) (2)
LPC(20:4) (2)
Coniferin (2)
Hydroxylamine (2)
Ethanolamine (2)
Arbutin (2)
Phytol (2)
Galactose (2)
Glycine (2)
Glycerol (2)
Uracil (2)
Lactitol (2)
Rhamnose (2)
Cellobiose (2)
Putrescine (2)
Ornithine (2)
Cholesterol (2)
Citric acid (2)
Maltotriose (2)
Maltitol (2)
Glucose (2)
Erythritol (2)
Xanthine (2)
Guanosine (2)
Levoglucosan (2)
Hypoxanthine (2)

IsPrivate

False (1)

First Public Date

2026 (29)
2024 (24)
2023 (24)
2025 (23)
2021 (18)
2014 (15)
2022 (13)
2019 (8)
2020 (6)
2015 (5)
2017 (4)
2013 (4)
2016 (3)
2018 (2)

Classification

bacteria (2)
helminths (1)
fungi (1)
protozoa (1)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (6)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (370)
2023 (311)
2025 (302)
2021 (286)
2020 (280)
2024 (275)
2019 (214)
2018 (171)
2017 (154)
2015 (129)
2016 (127)
2014 (101)
2013 (76)
2012 (59)
2011 (49)
2026 (44)
2010 (37)
2009 (35)
2008 (29)
2007 (23)
2006 (13)
2000 (11)
2001 (10)
2005 (9)
2002 (9)
2003 (8)
2004 (6)
1999 (5)
1998 (2)
1997 (1)

Lab affiliation

Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (3)
University of Modena and Reggio Emilia (2)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD - University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biozentrum, University of Basel, Switzerland (1)
BoRdeaux Institute of onCology (BRIC) UMR1312 Inserm / Université de Bordeaux Team 3 Liver cancers and invasion 146 rue Léo Saignat 33076 Bordeaux, France (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
College of Life Sciences, South-Central University for Nationalities (1)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia 2Murdoch Children’s Research Institute, Melbourne, VIC 3052, Australia 3Victorian Clinical Genetics Services, Murdoch Children’s Research Institute, Melbourne, VIC, 3052, Australia (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, Victoria, 3052, Australia (1)
Department of Biology, Stanford University, Stanford, CA, 94305 (1)
Department of Biomedicine, Aarhus University, Aarhus, Denmark STENO Diabetes Center Aarhus, Aarhus, Denmark (1)
Department of Chemstry & Department of Biochemistry and Molecular Biology, University of Clagary, Canada (1)
Department of Experimental Parasitology LMU München Lena-Christ-Str. 48 82152 Planegg-Martinsried Telefon: +49 (0) 89 2180 - 3622 Fax: +49 (0) 89 2180 - 3623 E-Mail: markus.meissner@lmu.de (1)
Department of Experimental Parasitology LMU München Lena-Christ-Str. 48 82152 Planegg-Martinsried Telefon: +49 (0) 89 2180 - 3622 Fax: +49 (0) 89 2180 - 3623 E-Mail: markus.meissner@lmu.de (1)
Department of Medical Biochemistry and Biophysics, University of Umea, Sweden (1)
Department of Medical Biology, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine,University of Geneva (1)
Department of Pediatric Pulmonology and Immunology, West China Second University Hospital, Sichuan University, Chengdu, China (1)
Department of Pharmaceutical Sciences, University at Buffalo, The State University of New York, Buffalo, NY, USA (1)
Department of Physiology, The Johns Hopkins University School of Medicine (1)
Departments of Biological Chemistry and Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Division of Cell Matrix Biology & Regenerative Medicine, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester, UK (1)
Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (1)
ETH Zürich, Department of Environmental Systems Science (1)
Equipe "Fonction et regulation des proteines de l'oeuf" INRA UR83 Recherches avicoles F-37380 Nouzilly (1)
Faculty of Medicine & Health Sciences School of Life Sciences University of Nottingham Queen's Medical Centre Nottingham NG7 2UH UK (1)
Fujian Agriculture and Forestry University (1)
Genecology Research Centre, University of the Sunshine Coast (1)

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Improved ultrastructure of marine invertebrates using non-toxic buffers.

Not available

S-EPMC4824901 | biostudies-literature

Cilia locally synthesize proteins to sustain their ultrastructure and functions

PRJNA745942 | ENA

mtDNA breaks compromise mitochondrial membrane ultrastructure and trigger an integrated stress response

PRJNA885786 | ENA

The neuroanatomical ultrastructure and function of a biological ring attractor

PRJNA649419 | ENA

Effect of insulin insufficiency on ultrastructure and function in skeletal muscle

PRJEB65585 | ENA

Treatment of human oocytes with extracellular vesicles from follicular fluid during rescue in vitro maturation enhances maturation rates and modulates oocyte proteome and ultrastructure

This project aimed to elucidate whether human follicular fluid–derived extracellular vesicles (ffEVs) enhance oocyte maturation during rescue in vitro maturation (rIVM). We characterised the protein cargo of ffEVs isolated from follicles containing oocytes at different maturation stages (GV, GVBD, a...

ORGANISM(S): Homo sapiens (Human)

2026-04-06 | PXD073018 | Pride

Comparative 3D ultrastructure of Plasmodium falciparum gametocytes.

Not available

S-EPMC11695595 | biostudies-literature

Cilia locally synthesize proteins to sustain their ultrastructure and functions

Cilia are microtubule-based hair-like organelles propelling locomotion and extracellular liquid flow or sensing environmental stimuli. As cilia are diffusion barrier-gated subcellular compartments, their protein components are thought to come from the cell body through intraflagellar transport or di...

ORGANISM(S): Mus musculus

2021-10-19 | GSE179935 | GEO

Prospects and limitations of expansion microscopy in chromatin ultrastructure determination.

Not available

S-EPMC7691311 | biostudies-literature

Collagen Fibril Ultrastructure in Mice Lacking Discoidin Domain Receptor 1.

Not available

S-EPMC5174982 | biostudies-literature

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