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TranscriptomicsEffects of upf2delta and upf3delta on gene expression
The Upf1, Upf2 and Upf3 proteins cooperate to implement nonsense-mediated decay. We used DNA microarrays for profiling RNA expression levels of upf2 and upf3 mutants
ORGANISM(S): Schizosaccharomyces pombe 
2013-06-03 | E-MTAB-1325 | biostudies-arrayexpress
TranscriptomicsRNAi knock down of known nonsense-mediated mRNA decay (NMD) factors in Drosophila cells
All eukaryotes studied to date have the capacity to detect and degrade mRNAs harboring premature translation termination codons (PTCs) in a process called nonsense-mediated mRNA decay (NMD) (reviewed in Wagner E & Lykke-Andersen J, 2002). This surveillance system allows the cell to prevent the expre...
ORGANISM(S): Drosophila melanogaster 
2005-11-01 | E-MEXP-202 | biostudies-arrayexpress
GenomicsIdentification of Upf2 and Upf3 targets in N. castellii using RNA-Seq
Identification of Upf2 and Upf3 targets in N. castellii using RNA-Seq
PRJNA1311609 | ENA
UnknownThe feedback control of UPF3 is crucial for RNA surveillance in plants.
Not available
S-EPMC4417159 | biostudies-literature
TranscriptomicsExpression data in Arabidopsis upf1-1 and upf3-1 mutants.
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in Arabidopsis upf1-1 and upf3-1 mutants. Keywords: untreated condition
ORGANISM(S): Arabidopsis thaliana 
2009-01-14 | GSE12101 | GEO
UnknownThe nonsense-mediated mRNA decay factor Upf3 negatively regulates bulk autophagy progression in <i>Saccharomyces cerevisiae</i>.
Not available
S-EPMC12885402 | biostudies-literature
TranscriptomicsIdentification of Upf2 and Upf3 targets in N. castellii using RNA-Seq
Here, we performed total RNA-Seq in mutant strains of N. castellii lacking the NMD core factors Upf2 and Upf3, in order to identify lncRNAs and mRNAs that are regulated by NMD in this species.
ORGANISM(S): Naumovozyma castellii 
2025-10-01 | GSE306672 | GEO
GenomicsArabidopsis thaliana
Expression data in Arabidopsis upf1-1 and upf3-1 mutants.
PRJNA113789 | ENA
TranscriptomicsTranscription profiling of yeast wild type, xrn1, xrn1 upf1, xrn1 nmd2, and xrn1 upf3 strains to investigate mRNA decay
To determine the effects of inactivation of both the nosense-mediated mRNA decay pathway and the general 5' to 3' decay pathway on yeast mRNA decay, we compared the expression profiles of the wild-type, xrn1, xrn1 upf1, xrn1 nmd2, and xrn1 upf3 strains.
ORGANISM(S): Saccharomyces cerevisiae 
2011-11-08 | E-MEXP-27 | biostudies-arrayexpress
GenomicsShoot regeneration process of callus derived from the wild type (Col-0), lba1-1/upf1-1, and upf3-1 hypocotyls of Arabidopsis thaliana
Shoot regeneration process of callus derived from the wild type (Col-0), lba1-1/upf1-1, and upf3-1 hypocotyls of Arabidopsis thaliana
PRJNA556645 | ENA
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