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Instrument Platform

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UNIPROT ID/AC

Q13131 (1)
P54619 (1)
P49815 (1)
Q92574 (1)
P23443 (1)
Q9Y478 (1)
Q96B36 (1)
P42345 (1)
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O70263 (1)
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O00548 (1)
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CHEBI ID

CHEBI:15354 (3)
CHEBI:16449 (3)
CHEBI:16737 (3)
CHEBI:16811 (3)
CHEBI:18237 (3)
CHEBI:271436 (2)
CHEBI:33135 (2)
CHEBI:28123 (2)
CHEBI:16870 (2)
CHEBI:18287 (1)
CHEBI:36080 (1)
CHEBI:4167 (1)
CHEBI:16077 (1)
CHEBI:48153 (1)
CHEBI:15721 (1)
CHEBI:16332 (1)
CHEBI:17797 (1)
CHEBI:17363 (1)
CHEBI:16863 (1)
CHEBI:17138 (1)
CHEBI:15361 (1)
CHEBI:17835 (1)
CHEBI:17794 (1)
CHEBI:16001 (1)
CHEBI:16905 (1)
CHEBI:17665 (1)
CHEBI:16108 (1)
CHEBI:18021 (1)
CHEBI:15946 (1)
CHEBI:17234 (1)

Metabolite Name

SM(d18:1/12:0) (2)
2-Heptanone (2)
2-Pentadecanone (2)
Gamma-Glutamylcysteine (2)
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CPA(16:0/0:0) (2)
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Pyrazine, 2,5-dimethyl- (1)
Butanethioic acid, S-methyl ester (1)
Pyrazine, methyl- (1)
Methane, isocyanato- (1)
Pyrazine, tetramethyl- (1)

First Public Date

2024 (40)
2014 (32)
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Modelling Approach

Ordinary differential equation model (5)

Study status

Recruiting (5)
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Not provided (2)
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Lab affiliation

ETH Zurich (5)
Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (4)
Technion Faculty of Medicine and Network Biology Research Laboratories, (3)
Institute of Clinical Sciences, Department of Oncology, Lund University, Sweden (2)
Institut de Pharmacologie et de Biologie Structurale, IPBS, Université de Toulouse, CNRS, UPS, Toulouse, France. (2)
1The Rappaport Faculty of Medicine and Research Institute, Haifa 3109601, Israel; 2Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 3200003, Israel (2)
Head of Laboratory Neuro-Oncology, Clinical and Cancer Proteomics, Neurology (2)
Institute of Cell Biology, University of Bern, CH-3012 Bern, Switzerland (2)
Friedrich Miescher Institute for Biomedical Research, FMI, Switzerland (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
IMB Mainz, Germany (2)
Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, UPS, Toulouse, France (2)
Laboratoire d’Anthropologie Moléculaire et Imagerie de Synthèse (AMIS), Université de Toulouse, CNRS, UPS, Toulouse, France (2)
Head of Discovery Proteomics Facility, Oxford (1)
Micalis Institute, PAPPSO, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France (1)
Biomedical Research, Novartis Pharma AG (1)
Division of Neurobiology The Roslin Institute Royal (Dick) School of Veterinary Studies College of Medicine and Veterinary Medicine University of Edinburgh Easter Bush Midlothian EH25 9RG SCOTLAND, UK t: 44 (0)131 651 9119 e: T.M.Wishart@Roslin.ed.ac.uk website: http://www.roslin.ed.ac.uk/tom-wishart http://www.euanmacdonaldcentre.com/research.html (1)
Dept. of Cell Biology Harvard Medical School Boston, MA, 02115 (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), IPHC, UMR 7178, Université de Strasbourg, CNRS, 67087 Strasbourg, France; Infrastructure Nationale de Protéomique ProFI − FR2048 CNRS, 67087 Strasbourg, France (1)
Génétique Quantitative et Évolution – Le Moulon PAPPSO INRA – Université Paris-Sud – CNRS – AgroParisTech Ferme du Moulon 91190 Gif-sur-Yvette France (1)
Molecular and Integrative Cystic Fibrosis (miCF) Research Laboratory, School of Women’s and Children’s Health, UNSW Medicine, UNSW Sydney (lab head) (1)
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Pacific Northwest National Lab (1)
Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), CONICET-UBA, Buenos Aires, Argentina (1)
Centre for Discovery Brain Sciences, University of Edinburgh, UK; Simons Initiative for the Developing Brain, University of Edinburgh, UK (1)
1)VIB Center for Medical Biotechnology, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium 2)Department of Biomolecular Medicine, Ghent University, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium 3)VIB Proteomics Core, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium (1)
Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany (1)

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IsPrivate

False (6)

Classification

fungi (1)
viruses (1)

Modification

89.011293 (1)
37.006603 (1)
56.026215 (1)
59.036279 (1)
31.989829 (1)

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RNA-seq analysis between mouse UPS tumors (KP) and mouse UPS tumors without HIF-2alpha (KPH2)

Purpose: determine RNA expression differences in an unbiased fashion between UPS tumors derived from LSL-KrasG12D;Trp53-/- (KP) mice, and UPS tumors derived from LSL-KrasG12D;Trp53-/-;Epas1-/- (KPH2) mice. Epas1 encodes HIF-2alpha protein. RNA-seq was performed on KP (n = 4) and KPH2 (n = 4) derive...

ORGANISM(S): Mus musculus

2015-12-31 | E-GEOD-67672 | biostudies-arrayexpress

Podospora conica strain:SC1-Ups

Schizothecium conicum SC1-Ups Transcriptome - SC1-Ups

PRJNA1360521 | ENA

Podospora conica strain:SC1-Ups

Schizothecium conicum SC1-Ups Minimal Draft genome sequencing

PRJNA953072 | ENA

Label-free LC-MS/MS of Ubiquitinated proteins derived from UPs-4T1/WT and UPs-4T1/EPB nanovaccine

In this project, 4T1 parental cells (4T1/WT) were exposed to increasing concentrations of epirubicin (EPB) to establish a novel multi-drug resistant CSC-like breast cancer cell line (4T1/EPB). The ubiquitinated proteins were enriched from 4T1/WT or 4T1/EPB derived cell lysate using a-Al2O3-Vx3 nanop...

ORGANISM(S): Mus musculus (Mouse)

2021-08-20 | PXD027822 | Pride

Expression data from embryonic stem cells following siRNA transfection of UPS members

This SuperSeries is composed of the following subset Series: GSE39770: Expression data from embryonic stem cells following siRNA transfection of UPS members [Differentiation_ES] GSE39771: Expression data from embryonic stem cells following siRNA transfection of UPS members [self_renewal] Refer to in...

ORGANISM(S): Mus musculus

2012-07-31 | E-GEOD-39772 | biostudies-arrayexpress

Expression data from embryonic stem cells following siRNA transfection of UPS members [self_renewal]

While transcriptional regulation of stem cell self-renewal and differentiation has been extensively studied, only a small number of studies have addressed the roles for post-translational modifications in these processes. A key mechanism of post-translational modification is ubiquitination by the u...

ORGANISM(S): Mus musculus

2012-07-31 | E-GEOD-39771 | biostudies-arrayexpress

Expression data from embryonic stem cells following siRNA transfection of UPS members [Differentiation_ES]

ORGANISM(S): Mus musculus

2012-07-31 | E-GEOD-39770 | biostudies-arrayexpress

RNA-seq analysis between mouse UPS tumors (KP) and mouse UPS tumors without HIF-2alpha (KPH2)

ORGANISM(S): Mus musculus

2015-12-31 | GSE67672 | GEO

Effect of depletion of Setd1a on gene expression in mouse Undifferentiated Pleomorphic Sarcoma (UPS)

PRJNA859693 | ENA

Shared prognostic markers in undifferentiated pleomorphic sarcoma and leiomyosarcoma of the extremities

Soft tissue sarcoma diagnostics and prognostics are challenging, particularly in highly malignant and pleomorphic subtypes such as undifferentiated pleomorphic sarcoma (UPS) and leiomyosarcoma (LMS). We applied 32K BAC-arrays and gene expression profiling to 18 extremity soft tissue LMS and 31 extre...

ORGANISM(S): Homo sapiens

2010-10-08 | E-GEOD-13775 | biostudies-arrayexpress

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