Usa300 - OmicsDI

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Genomics (263)
Transcriptomics (109)
Proteomics (67)
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Organisms

Staphylococcus aureus (73)
Aerococcus urinae NBRC 15544 = CCUG 36881 (58)
Alteromonadales (58)
Bacteria (58)
Canis lupus familiaris (58)
Carya cathayensis (58)
Ectopseudomonas oleovorans CECT 5344 (58)
Ensifer adhaerens (58)
Enterococcus faecalis (58)
Globicatella sanguinis (58)
Halictus scabiosae (58)
Histomonas meleagridis (58)
Human immunodeficiency virus 1 (58)
Mesocricetus auratus (58)
Staphylococcus aureus subsp. aureus USA300 (43)
Staphylococcus aureus subsp. aureus N315 (11)
Staphylococcus aureus subsp. aureus Mu50 (11)
Staphylococcus aureus subsp. aureus NCTC 8325 (11)
Staphylococcus aureus subsp. aureus COL (11)
Staphylococcus aureus subsp. aureus MW2 (11)
Staphylococcus aureus subsp. aureus MSSA476 (11)
Staphylococcus aureus subsp. aureus MRSA252 (11)
Mus musculus (9)
Homo sapiens (6)
Staphylococcus aureus subsp. aureus USA300_FPR3757 (3)
Staphylococcus aureus USA300-0114 (2)
Danio rerio (1)
Acinetobacter baumannii A118 (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Escherichia coli (1)

Organisms

Staphylococcus aureus (114)
Staphylococcus aureus subsp. aureus USA300 (23)
Mus musculus (9)
Homo sapiens (6)
Staphylococcus aureus USA300-0114 (2)
Staphylococcus aureus subsp. aureus USA300_FPR3757 (2)
Staphylococcus aureus LAC (2)
Staphylococcus aureus USA300-ISMMS1 (1)
Staphylococcus aureus 19321 (1)
Staphylococcus aureus 18813 (1)
Staphylococcus aureus 18811 (1)
Staphylococcus aureus 18810 (1)
Staphylococcus aureus 18809 (1)
Staphylococcus aureus 18808 (1)
Staphylococcus aureus 18807 (1)
Staphylococcus aureus 18806 (1)
Staphylococcus aureus 18805 (1)
Staphylococcus aureus subsp. aureus USA300_TCH959 (1)
Staphylococcus aureus subsp. aureus USA300_TCH1516 (1)

Repository

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geo (72)
pride (58)
biostudies-arrayexpress (43)
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Tissue

Cell culture (10)
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Disease

Disease by infectious agent (1)
Disease free (1)
Influenza (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
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Technology Type

Mass Spectrometry (58)
Shotgun proteomics (37)
Bottom-up proteomics (12)
Data-dependent acquisition (5)
Data-independent acquisition (3)
Gel-based experiment (3)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Top-down proteomics (2)
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HDMSE (1)

Instrument Platform

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Illumina HiSeq 1000 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ (1)
Q Exactive plus (Thermo Scientific instrument model) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

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2022 (22)
2011 (19)
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2024 (14)
2014 (13)
2017 (12)
2016 (12)
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2026 (9)
2020 (7)
2018 (7)
2013 (7)
2012 (7)
2023 (6)
2019 (6)
2009 (6)
2015 (4)
2010 (3)
2008 (3)

CHEBI ID

CHEBI:27376 (2)
CHEBI:16523 (2)
CHEBI:30754 (2)
CHEBI:16691 (2)
CHEBI:15901 (2)
CHEBI:16192 (2)
CHEBI:28635 (2)
CHEBI:17713 (2)
CHEBI:16265 (2)
CHEBI:16543 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:16856 (2)
CHEBI:16040 (2)
CHEBI:16811 (2)
CHEBI:18257 (2)
CHEBI:16695 (2)
CHEBI:17533 (2)
CHEBI:16708 (2)
CHEBI:16742 (2)
CHEBI:16576 (2)
CHEBI:15699 (2)
CHEBI:15824 (2)
CHEBI:28842 (2)
CHEBI:16958 (2)
CHEBI:16610 (2)
CHEBI:17497 (2)
CHEBI:17821 (2)
CHEBI:17154 (2)
CHEBI:30753 (2)

Metabolite Name

D-Alanyl-D-alanine (2)
L-Aspartate (2)
D-Serine (2)
Succinic semialdehyde (2)
Beta-Alanine (2)
N-Acetyl-L-glutamate (2)
Uracil (2)
Thymine (2)
L-Homoserine (2)
Ornithine (2)
L-Arginine (2)
L-Histidine (2)
Nicotinamide (2)
Choline (2)
Adenosine (2)
Spermidine (2)
Guanine (2)
Cytosine (2)
Adenine (2)
L-Serine (2)
L-Isoleucine (2)
L-Leucine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
Hypoxanthine (2)
Octadecanoicacid (1)
Perfluoroctanoic acid (PFOA) (1)
Hexadecanoicacid (1)
Xylenesulfonate (1)
2-Hydroxy glutaric acid (1)

First Public Date

2024 (31)
2014 (29)
2026 (26)
2019 (21)
2013 (20)
2017 (19)
2022 (17)
2020 (17)
2025 (16)
2015 (16)
2021 (12)
2023 (11)
2016 (11)
2018 (10)
2012 (2)

Classification

bacteria (155)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (12)
Comparative genomic hybridization by array (3)
High-throughput sequencing (1)

Release Date

2025 (49)
2023 (43)
2016 (40)
2018 (39)
2024 (38)
2022 (38)
2019 (35)
2021 (32)
2020 (29)
2017 (29)
2015 (27)
2011 (27)
2014 (24)
2013 (24)
2012 (17)
2010 (14)
2009 (6)
2008 (5)
2007 (5)
2026 (3)
2006 (1)

Lab affiliation

Department of Biological Sciences, Ohio University (4)
Medical Research Council Senior Research Fellow Associate Professor in RNA Biochemistry and Research Group Leader Centre for Synthetic and Systems Biology (SynthSys) University of Edinburgh Max Born Crescent CH Waddington Building, room 3.06 EH9 3BF Edinburgh UK (4)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (2)
Center for Functional Protein Assemblies, Department of Bioscience, TUM School of Natural Sciences, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, 85748 Garching, Germany (2)
Center for Integrated Protein Science Munich (CIPSM) at the Department of Chemistry, Technische Universität München, Lichtenbergstraße 4, 85747 Garching b. München (2)
1 Biochemistry & Microbiology, University of Victoria, Victoria, BC, Canada 2 Genome BC Proteomics Centre, University of Victoria, Victoria, BC, Canada (1)
Boston Children's Hospital (1)
Center for Staphylococcal Research Department of Pathology and Microbiology University of Nebraska Medical Center (1)
Centre for Synthetic and Systems Biology (SynthSys) University of Edinburgh Max Born Crescent CH Waddington Building, room 3.06 EH9 3BF Edinburgh (1)
Chair of Organic Chemistry II TU München Ernst-Otto-Fischer-Straße 8 D-85748 Garching Germany (1)
College of Animal Science, Jilin University, China (1)
Department of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA. (1)
Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, 4301 West Markham Street, Little Rock, AR 72205, USA Arkansas Children's Research Institute, 13 Children's Way, Little Rock, AR 72205, USA (1)
Department of Biochemistry, Vanderbilt University, Nashville, TN, USA (1)
Department of Biomedical Sciences, University of Sassari, Sassari, 07100, Italy (1)
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, DK-9220, Aalborg East, Denmark (1)
Department of Chemistry, Chair of Organic Chemistry II, Center For Functional Protein Assemblies (CPA), Technische Universität München, Lichtenbergstraße 4, 85748 Garching, Germany (1)
Department of Medical Biochemistry and Microbiology, Uppsala University, Box 582, 75123, Uppsala, Sweden (1)
Department of Medical Biology, UiT- The Arctic University of Norway, 9019 Tromsø, Norway (1)
Department of Medicine (Infectious Diseases) Brigham and Women's Hospital and Harvard Medical School (1)
Department of Microbial Proteomics, University of Greifswald, Centre of Functional Genomics of Microbes, Institute of Microbiology, Greifswald, Germany (1)
Department of Molecular Biosciences Shaw Lab University of South Florida 4202 East Fowler Avenue, ISA2015 Tampa, FL 33620-5150 USA (1)
Department of Pharmaceutics, School of Pharmaceutical Sciences of Wenzhou Medical University (1)
Department of Pharmacology, University of Oxford, United Kingdom (1)
Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, United Kingdom (1)
Division of Infectious Diseases, Brigham and Women's Hospital and Harvard Medical School (1)
Dr. Andreas Otto Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 4205920 fax: +49 3834 4205902 (1)
FU Berlin Institut für biologie-mikrobiologie Germany (1)
Freie Universität Berlin, Institute for Biology-Microbiology, Königin-Luise-Strasse 12-16, D-14195 Berlin, Germany. (1)
Infection Biology Department Interfaculty Institute of Microbiology and Infection Medicine University of Tübingen 72076 Tübingen Germany (1)

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Staphylococcus aureus subsp. aureus USA300

Staphylococcus aureus subsp. aureus USA300 genome sequencing

PRJNA67785 | ENA

Staphylococcus aureus subsp. aureus USA300

Staphylococcus aureus subsp. aureus USA300 Genome sequencing

PRJNA40073 | ENA

Staphylococcus aureus subsp. aureus USA300

Staphylococcus aureus subsp. aureus USA300 Genome sequencing

PRJNA275322 | ENA

Staphylococcus aureus strain:USA300

Staphylococcus aureus strain:USA300 Raw sequence reads

PRJNA525611 | ENA

Staphylococcus aureus strain:USA300

Staphylococcus aureus strain:USA300 Genome sequencing and assembly

PRJNA673936 | ENA

The ACME and SCCmec Linkage of Virulence with Resistance in the Community Methicillin Resistant S. aureus USA300 Clone

The epidemic character of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA), especially the geographically widespread clone USA300, is poorly understood. USA300 isolates carry a type IV staphylococcal chromosomal cassette mec (SCCmec) element conferring -lactam antibiotic ...

ORGANISM(S): Staphylococcus aureus

2010-05-19 | E-GEOD-9308 | biostudies-arrayexpress

Response of methicillin-resistant Staphylococcus aureus USA300 to a subinhibitory concentration of thioridazine - alone and in combination with dicloxacillin

Subinhibitory concentrations of the neuroleptic drug thioridazine (TDZ) are well-known to enhance the killing of methicillin-resistant S. aureus (MRSA) by Î²-lactam antibiotics, however, the mechanism underlying the synergy between TDZ and Î²-lactams is not fully understood. In the present study we ...

ORGANISM(S): Staphylococcus aureus subsp. aureus USA300_FPR3757

2013-05-20 | E-GEOD-43759 | biostudies-arrayexpress

Genetic Variation in Spatio-Temporal Confined USA300 Community-Associated MRSA Isolates: A Shift from Clonal Dispersion to Genetic Evolution?

Introduction Community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) are increasingly isolated, with USA300-0114 being the predominant clone in the USA. Comparative whole genome sequencing of USA300 isolates collected in 2002, 2003 and 2005 showed a limited number of single nucleo...

ORGANISM(S): Staphylococcus aureus

2011-04-15 | E-BUGS-108 | biostudies-arrayexpress

Staphylococcus aureus strain:USA300 | isolate:ATCC BAA-1717

Staphylococcus aureus USA300 SaoC regulon

PRJNA1017382 | ENA

Differential contributions of CodY, SigB and the hibernation promoting factor HPF to interactions of Staphylococcus aureus USA300 with human lung epithelial cells explained by proteome analysis

The Gram-positive bacterium Staphylococcus aureus is a leading cause of severe pneumonia. Therefore, we recently investigated the fate of S. aureus upon internalization by human lung epithelial cells. This uncovered three major adaptive responses of the bacteria, involving the SigB and CodY regulons...

ORGANISM(S): Staphylococcus aureus

2024-09-11 | PXD044962 | Pride

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