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ProteomicsIdentification of novel biomarker candidates for the immunohistochemical diagnosis of cholangiocellular carcinoma - LC-MS Part
The aim of this study was the identification of biomarkers for the immunohistochemical diagnosis of cholangiocellular carcinoma (CCC). CCC is a primary cancer which arises from the epithelial cells of the bile ducts and is characterised by high mortality rates due to its late clinical presentation a...
ORGANISM(S): Homo sapiens (Human) 
2014-07-21 | PXD000534 | Pride
Human Lc-ms Maldi Liver Cholangiocellular carcinoma 
ProteomicsPIA - iPRG2008 Benchmark Dataset
This dataset is no actual new study but the iPRG2008 benchmark dataset used in the PIA manuscript.
ORGANISM(S): Mus musculus (Mouse) 
2015-05-08 | PXD000793 | Pride
Mouse Iprg2008 Benchmark 
ProteomicsPIA - Yeast Gold Standard Benchmark Dataset
This Dataset is no actual new study but the Yeast Gold Standard benchmark dataset used in the PIA manuscript.
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2015-05-08 | PXD000792 | Pride
Benchmark Yeast 
ProteomicsPIA - Mouse Benchmark Dataset - PIA - An intuitive protein inference engine with a web-based user interface
This Dataset is no actual new study but the mouse benchmark dataset used in the PIA manuscript.
ORGANISM(S): Mus musculus (Mouse) 
2015-05-08 | PXD000790 | Pride
Mouse Benchmark 
ProteomicsReproducibility, specificity and accuracy of DIA quantification - DIA analysis
For the complete description see the manuscript. Data dependent acquisition (DDA) is the method of choice for mass spectrometry based proteomics discovery experiments, data-independent acquisition (DIA) is steadily becoming more important. One of the most important requirement to perform a DIA analy...
ORGANISM(S): Mus musculus (Mouse) 
2019-11-08 | PXD012988 | Pride
Dia Label-free quantification Spectral library Data-independent acquisition 
ProteomicsReproducibility, specificity and accuracy of DIA quantification - DDA analysis
Data dependent acquisition (DDA) is the method of choice for mass spectrometry based proteomics discovery experiments, data-independent acquisition (DIA) is steadily becoming more important. One of the most important requirement to perform a DIA analysis is the availability of spectral libraries for...
ORGANISM(S): Mus musculus (Mouse) 
2019-11-08 | PXD012986 | Pride
Data-independent acquisition (dia) Label-free quantification Peptide identification Spectral library 
ProteomicsReproducibility, specificity and accuracy of DIA quantification - Spectral Libraries
For the complete description see the manuscript. Data dependent acquisition (DDA) is the method of choice for mass spectrometry based proteomics discovery experiments, data-independent acquisition (DIA) is steadily becoming more important. One of the most important requirement to perform a DIA analy...
ORGANISM(S): Mus musculus (Mouse) 
2019-11-08 | PXD012987 | Pride
Dia Label-free quantification Peptide identification Spectral library Data-independent acquisition 
ProteomicsReproducibility, specificity and accuracy of DIA quantification - OpenSWATH
Data dependent acquisition (DDA) is the method of choice for mass spectrometry based proteomics discovery experiments, data-independent acquisition (DIA) is steadily becoming more important. One of the most important requirement to perform a DIA analysis is the availability of spectral libraries for...
ORGANISM(S): Mus musculus (Mouse) 
2019-11-08 | PXD014956 | Pride
Spike-in C2c12 Dia 
ProteomicsIn-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - iPRG 2008 Swiss-Prot analysis
This dataset is no actual new study but the results of the benchmark of the iPRG2008 benchmark dataset used in the manuscript "In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics".
ORGANISM(S): Mus musculus (Mouse) 
2016-08-10 | PXD003953 | Pride
Mouse Reanalysis 
ProteomicsIn-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics - iPRG 2008 UniProt proteome analysis
This dataset is no actual new study but the results of the benchmark of the iPRG2008 benchmark dataset used in the manuscript "In-depth Analysis of Protein Inference Algorithms using a Workflow Framework and Well-Defined Metrics".
ORGANISM(S): Mus musculus (Mouse) 
2016-08-10 | PXD003954 | Pride
Mouse Reanalysis 
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