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Plants have evolved shoot elongation mechanisms to escape from diverse environmental stresses such as flooding and vegetative shade. The apparent similarity in growth responses suggests possible convergence of the signalling pathways. Shoot elongation is mediated by passive ethylene accumulating in ...
ORGANISM(S): Arabidopsis thaliana 
This study profiles transcriptomic changes of Arabidopsis thaliana Col-0 in response to submergence. This dataset includes CEL files, RMA signal values and MAS5 P/M/A calls from total mRNA populations of plants at 9 to 10 leaf rosette stage. Biological replicates of root and shoot tissues were harve...
ORGANISM(S): Arabidopsis thaliana 
Global microRNA (miRNA) profiling was performed in 18 human islet donors using Exiqon’s LNA (locked nucleic acid)-based array platform. Donors were divided into three groups according to their HbA1c levels and type-2 diabetes diagnosis (normal glucose tolerance - NGT, impaired glucose tolerance - IG...
ORGANISM(S): Homo sapiens 
Preceding hypoxia by an ethylene treatment improves root tip survival. To identify key players and processes mediating ethylene enhanced tolerance, the transcriptomic response of root tips was investigated directly after ethylene or control pretreatment, 2 and 4 hours of subsequent hypoxia, and 1 ho...
ORGANISM(S): Arabidopsis thaliana 
RNA sequencing (RNA-seq) was performed to investigate potential roles of the unfolded protein response in submergence and recovery responses of Arabidopsis thaliana. Plants were grown to the 10-leaf stage and then subjected to 4 days of complete submergence. Samples were collected at four time point...
ORGANISM(S): Arabidopsis thaliana 
This repository contains all the FASTQ files for the five data modalities (scRNA-seq, scATAC-seq, Multiome, CITE-seq+scVDJ-seq, and spatial transcriptomics) used in the article \\"An Atlas of Cells in The Human Tonsil,\\" published in Immunity in 2024. Inspired by the TCGA barcodes, we have named ea...
ORGANISM(S): Homo sapiens 
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