Vargas J J - OmicsDI

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Unknown (2449)
Proteomics (38)
Transcriptomics (13)
Metabolomics (7)
Genomics (2)

Organisms

Homo sapiens (23)
Mus musculus (6)
Olea europaea (3)
Escherichia coli (2)
Obama nungara (2)
Persea americana (2)
Schmidtea mediterranea (2)
Toxoplasma gondii ME49 (2)
Bradyrhizobium japonicum (1)
Macaca mulatta (1)
Arabidopsis thaliana (1)
Arenicola marina (1)
Caenorhabditis elegans (1)
Candida albicans (1)
Capsicum annuum (1)
Ectomocoris (1)
Haloferax volcanii (1)
Lineus sanguineus (1)
Litoditis marina (1)
Oncocephalus (1)
Ooperipatellus viridimaculatus (1)
Phorcus turbinatus (1)
Physella (1)
Piscirickettsia salmonis AUSTRAL-005 (1)
Rattus norvegicus (1)
Rhizobium leguminosarum bv. phaseoli CCGM1 (1)
Rhizobium sp. CIAT652 (1)
Sinorhizobium americanum (1)
Sinorhizobium americanum CCGM7 (1)
Siphonaria pectinata (1)

Organisms

Vanessa cardui (1)

Repository

pride (36)
biostudies-arrayexpress (13)
MetaboLights (7)
ENA (2)
jPOST (1)
MassIVE (1)

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Cell culture (8)
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Disease

Toxoplasmosis (2)
Alexander disease (1)
Disease free (1)
Melanoma (1)
Pancreatic ductal adenocarcinoma (1)
Pancreatic ductal carcinoma (1)
Parkinson's disease (1)
Septicemia (1)
Zika fever (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (22)
Affinity purification coupled with mass spectrometry proteomics (7)
Mass spectrometry (6)
Bottom-up proteomics (4)
Data-dependent acquisition (3)
Gel-based experiment (3)
Top-down proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (5)
Ion Torrent PGM (1)
Illumina HiSeq 2500 (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2022 (12)
2023 (7)
2024 (6)
2019 (5)
2014 (4)
2026 (4)
2025 (4)
2016 (3)
2015 (3)
2010 (3)
2021 (3)
2020 (2)
2011 (1)
2018 (1)

CHEBI ID

CHEBI:141395 (2)
CHEBI:15354 (2)
CHEBI:17568 (2)
CHEBI:18186 (2)
CHEBI:24813 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:29016 (2)
CHEBI:1014 (1)
CHEBI:125610 (1)
CHEBI:131449 (1)
CHEBI:131700 (1)
CHEBI:133343 (1)
CHEBI:133530 (1)
CHEBI:134612 (1)
CHEBI:135821 (1)
CHEBI:136618 (1)
CHEBI:136623 (1)
CHEBI:137228 (1)
CHEBI:137245 (1)
CHEBI:137819 (1)
CHEBI:13790 (1)
CHEBI:138026 (1)
CHEBI:138367 (1)
CHEBI:138389 (1)
CHEBI:138391 (1)
CHEBI:138394 (1)

Metabolite Name

(+)-(3,3''-bi-4H-1-benzopyran)-4,4''-dione,2,2'',3,3''-tetrahydro-5,5'',7''-trihydroxy-7-methoxy-2-(4-methoxyphenyl)-2''-(4-hydroxyphenyl) (1)
(+)-Medioresinol (1)
(+)-zuonin A (1)
(+-)-9-(2-Cyanoethyl)dihydrozeatin (1)
(+/-)-oxiran-2-ylmethyl (9Z)-hexadec-9-enoate (1)
(-)-Amurensisin (1)
(-)-Epicatechin(4.beta.-->8)(-)-epigallocatechin (1)
(-)-yatein (1)
(1-methyl-5-nitroimidazol-2-yl)methyl N-[1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]carbamate (1)
(10S,13R,14R,16R,17R)-16-hydroxy-17-[(2R)-1-hydroxy-6-methylhept-5-en-2-yl]-4,4,10,13,14-pentamethyl-1,2,5,6,7,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-3-one (1)
(1E)-1-[2,2,4-trimethyl-3-[(1E,3E,5E,7E,9E)-3,7,12-trimethyltrideca-1,3,5,7,9,11-hexaenyl]cyclohex-3-en-1-ylidene]propan-2-one (1)
(1E,3E,5E,7E,9E,11E,13E,15Z)-1-[(2R,4S)-2,4-dihydroxy-2,6,6-trimethylcyclohexylidene]-16-(hydroxymethyl)-18-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-3,7,12-trimethyloctadeca-3,5,7,9,11,13,15-heptaen-17-yn-2-one (1)
(1E,4E)-1-(3,4-dimethoxyphenyl)-5-(4-hydroxy-3-methoxyphenyl)penta-1,4-dien-3-one (1)
(1E,6E)-1-(4-hydroxy-3-methoxyphenyl)-7-(2-hydroxyphenyl)hepta-1,6-diene-3,5-dione (1)
(1R)-3,5,5-trimethyl-4-[(3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (1)
(1R,2R,3S,4S)-4-(2-hydroxyethyl)-2,3-bis(phenylmethoxymethyl)cyclopentan-1-ol (1)
(1R,2R,4S,4aS,6aS,6aS,6bR,12aS,14bS)-1,4,11-trihydroxy-1,2,6a,6b,9,12a-hexamethyl-10-oxo-2,3,4,5,6,6a,7,8,13,14b-decahydropicene-4a-carboxylic acid (1)
(1R,2R,4aS,6aR,6aS,6bR,8R,8aR,10S,12aR,14bS)-1,8,10-trihydroxy-1,2,6a,6b,12a-pentamethyl-9-methylidene-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,2R,4aS,6aR,6aS,6bR,8aR,10S,11R,12aR,14bS)-1,10,11-trihydroxy-1,2,6a,6b,12a-pentamethyl-9-methylidene-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,2S,4S,4aS,8aS)-4a,8,8-trimethyl-1,2,3,4,5,6,7,8a-octahydronaphthalene-1,2,4-triol (1)
(1R,3R,4S,5R)-1,3,4-trihydroxy-5-[(E)-3-(3-hydroxy-4-methoxyphenyl)prop-2-enoyl]oxycyclohexane-1-carboxylic acid (1)
(1R,3aS,4E,7aR)-4-[2-[(3R,5R)-3,5-dimethyl-4-methylidenecyclohexylidene]ethylidene]-7a-methyl-1-[(E,2S)-6-methylhept-3-en-2-yl]-2,3,3a,5,6,7-hexahydro-1H-indene (1)
(1R,3aS,5aR,5bR,7aR,11aR,11bR,13aR,13bR)-5a,5b,8,8,11a-pentamethyl-9-oxo-1-prop-1-en-2-yl-2,3,4,5,6,7,7a,11b,12,13,13a,13b-dodecahydro-1H-cyclopenta[a]chrysene-3a-carbaldehyde (1)
(1R,3aS,5aS,5bR,7aR,11aR,11bR,13aR,13bR)-5b,8,8,11a-tetramethyl-7,9-dioxo-1-prop-1-en-2-yl-1,2,3,4,5,6,7a,10,11,11b,12,13,13a,13b-tetradecahydrocyclopenta[a]chrysene-3a,5a-dicarboxylic acid (1)
(1R,4R,7R,8R,10R,13R,14S)-13,14-diethyl-7-[(3R,4S,6R)-3-hydroxy-4,6-dimethyloxan-2-yl]oxy-4,6,6,8,10-pentamethyl-17-[4-(4-pyridin-4-ylimidazol-1-yl)butyl]-12,15-dioxa-17-azabicyclo[12.3.0]heptadecane-3,9,11,16-tetrone (1)
(1R,4aR,6aR,6aS,6bR,8aR,10S,12aR,14bS)-1-hydroxy-1,6a,6b,9,9,12a-hexamethyl-2-methylidene-10-[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy-4,5,6,6a,7,8,8a,10,11,12,13,14b-dodecahydro-3H-picene-4a-carboxylic acid (1)
(1R,4aS,4bR,6aS,7S,10aS,10bR,12S,12aS)-2-acetyl-12-acetyloxy-7-ethyl-4b,7,10a,12a-tetramethyl-1,4,4a,5,6,6a,8,9,10,10b,11,12-dodecahydrochrysene-1-carboxylic acid (1)
(1R,4aS,6bR,10S,12aR,14bS)-1-hydroxy-1,2,6a,6b,9,9,12a-heptamethyl-10-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,8S,9R,10R,12R)-9,10,12-trihydroxy-3,7,11-trioxabicyclo[6.3.1]dodecane-4,6-dione (1)
(1S,2R,4aS,6aR,6aR,6bR,8aR,12aR,14bS)-1,2,6b,9,9,12a-hexamethyl-10-oxo-1,2,3,4,5,6,6a,7,8,8a,11,12,13,14b-tetradecahydropicene-4a,6a-dicarboxylic acid (1)

First Public Date

2023 (2)

Study type

Transcription profiling by array (7)
Unknown experiment type (3)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (333)
2021 (316)
2023 (283)
2025 (273)
2024 (232)
2020 (209)
2019 (173)
2018 (127)
2017 (102)
2016 (90)
2015 (72)
2014 (51)
2026 (47)
2013 (33)
2012 (31)
2011 (24)
2010 (22)
2009 (18)
2008 (15)
2007 (3)
2006 (3)
2005 (2)
2004 (1)
2002 (1)
1999 (1)

Lab affiliation

UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
Universite de Montpellier LPHI UMR5235, France (2)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Associate professor, department of Biology. University of Rochester,NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA ( lab head ) (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Centre for Gene Regulation and Expression, Life Sciences Research Complex, University of Dundee, Dundee, UK (1)
Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, Mexico. (1)
Chair of Proteomics and Bioanalytics Technical University of Munich Partner Site of the German Cancer Consortium (1)
Department of Biological Engineering, Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (1)
Department of Chemistry Center for Gastrointestinal Biology and Disease Integrated Program for Biological and Genome Sciences University of North Carolina at Chapel Hill (1)
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA (1)
Department of Pharmacology Director of Proteomics Mass Spectrometry Facility (1)
Dr. Alexander Schmidt Proteomics Core Facility Biozentrum, University of Basel Klingelbergstrasse 50/70 CH-4056 Basel / Switzerland (1)
Estación Experimental del Zaidín, CSIC, Granada, Spain (1)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (1)
Functional Proteomics, ICR (1)
Head Proteomics Group Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Institute for Molecular Biosciences, The University of Queensland (1)
Instituto de Ecologia, A.C. (INECOL). Red de Estudios Moleculares Avanzados (1)
Instituto de Ecología, Carretera antigua a Coatepec 351, El Haya, Xalapa, Veracruz, México. (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Metazoa Phylogenomics & Genome Evolution Lab, Institute of Evolutionary Biology (CSIC-UPF) (1)
Metazoa Phylogenomics & Genome Evolution Lab, Institute of Evolutionary Biology (CSIC-UPF). Passeig Marítim de la Barceloneta 37-49; 08003 Barcelona; Spain (1)
Microbiology Department, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá 110231, Colombia Microbiology and Parasitology Department, Faculty of Pharmacy, Universidad Complutense de Madrid, Madrid 28040, Spain (1)
Molecular Genetics, Technical University Kaiserslautern (1)
Otto von Guericke University, Bioprocess Engineering, Universitätsplatz 2, 39106 Magdeburg, Germany (1)
Professor, Department of Pharmaceutical Sciences, Netherlaands Proteomics Centre, Utrecht University, The Netherlands (1)
Proteomics Unit, CNIC Madrid, Spain (1)
Red de Estudios Moleculares Avanzados, Instituto de Ecologia, A.C., Mexico (1)
U.O. Proteomica e Spettrometria di Massa Centro Biotecnologie Avanzate (CBA) IRCCS Ospedale Policlinico San Martino, Genova, Italiy (1)

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