Vargas P P - OmicsDI

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Unknown (2295)
Proteomics (32)
Transcriptomics (30)
Metabolomics (8)
Genomics (2)

Organisms

Homo sapiens (26)
Mus musculus (10)
Olea europaea (3)
Rhizobium etli (1)
Pseudomonas putida F1 (1)
Solanum phureja (1)
marine metagenome (1)
Bradyrhizobium japonicum (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Macaca mulatta (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Bacteroides fragilis NCTC 9343 (1)
Candida albicans (1)
Capsicum annuum (1)
Coffea arabica (1)
Danio rerio (1)
Ectomocoris (1)
Escherichia coli (1)
Haloferax volcanii (1)
Heloderma horridum horridum (1)
Hermetia illucens (1)
Obama nungara (1)
Oncocephalus (1)
Piscirickettsia salmonis AUSTRAL-005 (1)
Schmidtea mediterranea (1)
Zea mays (1)

Organisms

Rattus norvegicus (1)

Repository

pride (31)
biostudies-arrayexpress (30)
MetaboLights (8)
ENA (2)
jPOST (1)

Tissue

Cell culture (5)
Pollen (3)
Kidney (2)
Venom (2)
Whole body (2)
Astrocyte (1)
Brain (1)
Cell suspension culture (1)
Corn silk (1)
Early embryonic cell (1)
Embryo (1)
Epithelial cell of lung (1)
FL83B cell (1)
Fibroblast (1)
Hepatocyte (1)
Liver (1)
Lung (1)
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Pericarp (1)
Peripheral blood mononuclear cell (1)
Permanent cell line cell (1)
Placenta (1)
Plant cell (1)
Protein secretion (1)
Spermatid (1)
Testis (1)

Disease

Alexander disease (1)
Breast cancer (1)
Disease free (1)
Melanoma (1)
Non-small cell lung carcinoma (1)
Pancreatic ductal carcinoma (1)
Parkinson's disease (1)
Septicemia (1)
Zika fever (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (20)
Mass spectrometry (7)
Bottom-up proteomics (6)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Top-down proteomics (2)
Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (6)
Ion Torrent PGM (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (9)
2022 (9)
2014 (7)
2024 (7)
2016 (4)
2015 (4)
2012 (4)
2011 (4)
2026 (4)
2023 (4)
2010 (3)
2019 (3)
2009 (2)
2021 (2)
2013 (1)
2008 (1)
2007 (1)
2017 (1)

CHEBI ID

CHEBI:141395 (2)
CHEBI:15354 (2)
CHEBI:15401 (2)
CHEBI:15864 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16634 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)
CHEBI:17568 (2)
CHEBI:17574 (2)
CHEBI:18186 (2)
CHEBI:24813 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:29016 (2)
CHEBI:30763 (2)
CHEBI:36062 (2)
CHEBI:36281 (2)
CHEBI:6650 (2)
CHEBI:1014 (1)
CHEBI:125610 (1)
CHEBI:131449 (1)
CHEBI:131700 (1)
CHEBI:133343 (1)
CHEBI:133530 (1)

Metabolite Name

Biochanin A (2)
Biochanin B (2)
Luteolin (2)
(+)-(3,3''-bi-4H-1-benzopyran)-4,4''-dione,2,2'',3,3''-tetrahydro-5,5'',7''-trihydroxy-7-methoxy-2-(4-methoxyphenyl)-2''-(4-hydroxyphenyl) (1)
(+)-Medioresinol (1)
(+)-zuonin A (1)
(+-)-9-(2-Cyanoethyl)dihydrozeatin (1)
(+/-)-oxiran-2-ylmethyl (9Z)-hexadec-9-enoate (1)
(-)-Amurensisin (1)
(-)-Epicatechin(4.beta.-->8)(-)-epigallocatechin (1)
(-)-yatein (1)
(1-methyl-5-nitroimidazol-2-yl)methyl N-[1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-oxopyrimidin-4-yl]carbamate (1)
(10S,13R,14R,16R,17R)-16-hydroxy-17-[(2R)-1-hydroxy-6-methylhept-5-en-2-yl]-4,4,10,13,14-pentamethyl-1,2,5,6,7,11,12,15,16,17-decahydrocyclopenta[a]phenanthren-3-one (1)
(1E)-1-[2,2,4-trimethyl-3-[(1E,3E,5E,7E,9E)-3,7,12-trimethyltrideca-1,3,5,7,9,11-hexaenyl]cyclohex-3-en-1-ylidene]propan-2-one (1)
(1E,3E,5E,7E,9E,11E,13E,15Z)-1-[(2R,4S)-2,4-dihydroxy-2,6,6-trimethylcyclohexylidene]-16-(hydroxymethyl)-18-[(4R)-4-hydroxy-2,6,6-trimethylcyclohexen-1-yl]-3,7,12-trimethyloctadeca-3,5,7,9,11,13,15-heptaen-17-yn-2-one (1)
(1E,4E)-1-(3,4-dimethoxyphenyl)-5-(4-hydroxy-3-methoxyphenyl)penta-1,4-dien-3-one (1)
(1E,6E)-1-(4-hydroxy-3-methoxyphenyl)-7-(2-hydroxyphenyl)hepta-1,6-diene-3,5-dione (1)
(1R)-3,5,5-trimethyl-4-[(3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (1)
(1R,2R,3S,4S)-4-(2-hydroxyethyl)-2,3-bis(phenylmethoxymethyl)cyclopentan-1-ol (1)
(1R,2R,4S,4aS,6aS,6aS,6bR,12aS,14bS)-1,4,11-trihydroxy-1,2,6a,6b,9,12a-hexamethyl-10-oxo-2,3,4,5,6,6a,7,8,13,14b-decahydropicene-4a-carboxylic acid (1)
(1R,2R,4aS,6aR,6aS,6bR,8R,8aR,10S,12aR,14bS)-1,8,10-trihydroxy-1,2,6a,6b,12a-pentamethyl-9-methylidene-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,2R,4aS,6aR,6aS,6bR,8aR,10S,11R,12aR,14bS)-1,10,11-trihydroxy-1,2,6a,6b,12a-pentamethyl-9-methylidene-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid (1)
(1R,2S,4S,4aS,8aS)-4a,8,8-trimethyl-1,2,3,4,5,6,7,8a-octahydronaphthalene-1,2,4-triol (1)
(1R,3R,4S,5R)-1,3,4-trihydroxy-5-[(E)-3-(3-hydroxy-4-methoxyphenyl)prop-2-enoyl]oxycyclohexane-1-carboxylic acid (1)
(1R,3aS,4E,7aR)-4-[2-[(3R,5R)-3,5-dimethyl-4-methylidenecyclohexylidene]ethylidene]-7a-methyl-1-[(E,2S)-6-methylhept-3-en-2-yl]-2,3,3a,5,6,7-hexahydro-1H-indene (1)
(1R,3aS,5aR,5bR,7aR,11aR,11bR,13aR,13bR)-5a,5b,8,8,11a-pentamethyl-9-oxo-1-prop-1-en-2-yl-2,3,4,5,6,7,7a,11b,12,13,13a,13b-dodecahydro-1H-cyclopenta[a]chrysene-3a-carbaldehyde (1)
(1R,3aS,5aS,5bR,7aR,11aR,11bR,13aR,13bR)-5b,8,8,11a-tetramethyl-7,9-dioxo-1-prop-1-en-2-yl-1,2,3,4,5,6,7a,10,11,11b,12,13,13a,13b-tetradecahydrocyclopenta[a]chrysene-3a,5a-dicarboxylic acid (1)
(1R,4R,7R,8R,10R,13R,14S)-13,14-diethyl-7-[(3R,4S,6R)-3-hydroxy-4,6-dimethyloxan-2-yl]oxy-4,6,6,8,10-pentamethyl-17-[4-(4-pyridin-4-ylimidazol-1-yl)butyl]-12,15-dioxa-17-azabicyclo[12.3.0]heptadecane-3,9,11,16-tetrone (1)
(1R,4aR,6aR,6aS,6bR,8aR,10S,12aR,14bS)-1-hydroxy-1,6a,6b,9,9,12a-hexamethyl-2-methylidene-10-[(2S,3R,4S,5S)-3,4,5-trihydroxyoxan-2-yl]oxy-4,5,6,6a,7,8,8a,10,11,12,13,14b-dodecahydro-3H-picene-4a-carboxylic acid (1)
(1R,4aS,4bR,6aS,7S,10aS,10bR,12S,12aS)-2-acetyl-12-acetyloxy-7-ethyl-4b,7,10a,12a-tetramethyl-1,4,4a,5,6,6a,8,9,10,10b,11,12-dodecahydrochrysene-1-carboxylic acid (1)

First Public Date

2023 (1)
2014 (1)

Study type

Transcription profiling by array (19)
Unknown experiment type (3)
Methylation profiling by array (3)
RNA-seq of coding RNA (3)
Transcription profiling by SAGE (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (330)
2021 (295)
2023 (267)
2025 (259)
2024 (224)
2020 (192)
2019 (155)
2018 (109)
2017 (92)
2016 (84)
2015 (66)
2014 (58)
2012 (39)
2026 (36)
2013 (32)
2011 (28)
2010 (21)
2009 (15)
2008 (7)
2007 (5)
2006 (4)
2005 (2)
2001 (2)
2003 (1)
1998 (1)

Lab affiliation

UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Anatomic Pathology, mayo clinic (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI) - Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET) - Universidad Nacional de Rosario, Suipacha 531, S2002LRK, Rosario Santa Fe -Argentina (1)
Chair of Proteomics and Bioanalytics Technical University of Munich Partner Site of the German Cancer Consortium (1)
Department of Cancer Biology UCL cancer institute University College London (1)
Department of Clinical Pharmacology and Toxicology, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland (1)
Department of Pathology, Stanford University School of Medicine; Stanford, CA, USA (1)
Department of Pharmacology Director of Proteomics Mass Spectrometry Facility (1)
Division of Biotechnology, MELISA Institute, Concepción, Chile. (1)
Dr. Alexander Schmidt Proteomics Core Facility Biozentrum, University of Basel Klingelbergstrasse 50/70 CH-4056 Basel / Switzerland (1)
EDyP (1)
Estación Experimental del Zaidín, CSIC, Granada, Spain (1)
Functional Proteomics, ICR (1)
Institute for Molecular Biosciences, The University of Queensland (1)
Instituto de Ecología, A.C. (1)
Instituto de Ecología, Carretera antigua a Coatepec 351, El Haya, Xalapa, Veracruz, México. (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Metazoa Phylogenomics & Genome Evolution Lab, Institute of Evolutionary Biology (CSIC-UPF). Passeig Marítim de la Barceloneta 37-49; 08003 Barcelona; Spain (1)
Microbiology Department, Faculty of Sciences, Pontificia Universidad Javeriana, Bogotá 110231, Colombia Microbiology and Parasitology Department, Faculty of Pharmacy, Universidad Complutense de Madrid, Madrid 28040, Spain (1)
Professor of Laboratory Medicine and Pathology; ConsultantPathology (1)
Professor, Department of Pharmaceutical Sciences, Netherlaands Proteomics Centre, Utrecht University, The Netherlands (1)
Proteomics & Metabolomics Facility, University of Connecticut (1)
Proteomics Unit, CNIC Madrid, Spain (1)
The Institute of Cancer Research, London (1)
U.O. Proteomica e Spettrometria di Massa Centro Biotecnologie Avanzate (CBA) IRCCS Ospedale Policlinico San Martino, Genova, Italiy (1)
University of Malaga (1)
proteogenomics laboratory (1)

Tags

xref:PubMed:18683239 (1)

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EST mining of yellow potato and gene expression profiling of its infection by P. infestans using SAGE - SOLEXA

The late blight pathogen, Phytophthora infestans has a broad host range within the Solanaceae family, including yellow potato (Solanum phureja). The disease caused by P. infestans in S. phureja is poorly understood and is a major concern in Colombia. Expressed Sequence Tag (EST) libraries obtained f...

ORGANISM(S): Solanum phureja

2009-06-13 | E-GEOD-11781 | biostudies-arrayexpress

Transcriptional profile of primary astrocytes expressing ALS-linked mutant SOD1.

Amyotrophic lateral sclerosis (ALS) is caused by the progressive degeneration of motor neurons. Mutations in the Cu/Zn superoxide dismutase (SOD1) are found in about 20% of patients with familial ALS. Mutant SOD1 causes motor neuron death through an acquired toxic property. Although, molecular mecha...

ORGANISM(S): Rattus norvegicus

2008-12-18 | E-GEOD-7441 | biostudies-arrayexpress

Whole genome expression after modulation of miR-30a expression

A subset of breast cancer cells displays increased ability to self-renew and reproduce breast cancer heterogeneity (so called, breast tumour-initiating cells or BT-ICs). As microRNAs (miRNAs) control developmental programs in stem cells, BT-ICs may also rely on specific miRNA profiles for their sust...

ORGANISM(S): Homo sapiens

2013-03-22 | E-GEOD-36565 | biostudies-arrayexpress

Protein Kinase A (PKA) Type I Interacts with P-Rex1, a Rac Guanine Nucleotide Exchange Factor: EFFECT ON PKA LOCALIZATION AND P-Rex1 SIGNALING.

Not available

S-EPMC4813559 | biostudies-literature

RNA-seq analysis of Pseudomonas syringae pv. tomato DC3000

This experiment analyses the expresssion data of the wild type P. syringae pv. tomato DC3000 compared with its fleQ mutant grown under two different conditions: liquid culture in minimal medium and swarming plates.

ORGANISM(S): Pseudomonas syringae pv. tomato str. DC3000

2015-12-31 | E-MTAB-3779 | biostudies-arrayexpress

Testing Explant Sources, Culture Media, and Light Conditions for the Improvement of Organogenesis in Pinus ponderosa (P. Lawson and C. Lawson).

Not available

S-EPMC9966710 | biostudies-literature

An unstable Th epitope of P. falciparum fosters central memory T cells and anti-CS antibody responses.

Not available

S-EPMC4077652 | biostudies-literature

The Crucial Role of Noncovalent Interactions in PLGA Nanoparticles: Impact on Carvacrol/<i>p</i>‑Cymene Release, Biological Activity, and Antibiofilm Properties.

Not available

S-EPMC12809508 | biostudies-literature

The Response Surface Optimization of Supercritical CO2 Modified with Ethanol Extraction of p-Anisic Acid from Acacia mearnsii Flowers and Mathematical Modeling of the Mass Transfer.

Not available

S-EPMC8840752 | biostudies-literature

Protein-based vaccine protect against Piscirickettsia salmonis in Atlantic salmon (Salmo salar)

An effective and economical vaccine against the Piscirickettsia salmonis pathogen is needed for sustainable salmon farming and to reduce disease-related economic losses. Consequently, the aquaculture industry urgently needs to investigate efficient prophylactic measures. Three protein-based vaccine ...

ORGANISM(S): Piscirickettsia salmonis AUSTRAL-005

2021-02-16 | PXD023109 | Pride

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