Vega C C - OmicsDI

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Unknown (2479)
Transcriptomics (81)
Proteomics (68)
Genomics (11)
Metabolomics (6)

Organisms

Homo sapiens (67)
Mus musculus (32)
Ovis aries (7)
Arabidopsis thaliana (6)
Yersinia pseudotuberculosis YPIII (3)
Solanum lycopersicum (3)
Rattus norvegicus (3)
Anopheles gambiae str. PEST (3)
Equus caballus (3)
Plasmodium berghei ANKA (3)
Drosophila melanogaster (2)
Saccharomyces cerevisiae (2)
Scyliorhinus canicula (1)
Cimex lectularius (1)
Capsicum annuum (1)
Miscanthus sacchariflorus (1)
Streptococcus pneumoniae (1)
Pseudomonas aeruginosa (1)
Candida albicans (1)
Danio rerio (1)
1938441 (1)
Aedes aegypti (1)
Anisakis simplex (1)
Chlamydomonas reinhardtii (1)
Cnidaria (1)
Escherichia coli (1)
Fungi (1)
Inquilinus limosus (1)
Klebsiella aerogenes (1)
Leishmania major strain Friedlin (1)

Organisms

Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (85)
pride (63)
MetaboLights (6)
MassIVE (5)
EGA (3)
ENA (3)
geo (1)

Tissue

Cell culture (6)
Kidney (6)
Brain (5)
Heart (3)
Liver (3)
Blood plasma (2)
Bone marrow (2)
Hemolymph (2)
Salivary gland (2)
Sperm (2)
Vermiform appendix (2)
Adipose tissue (1)
Blood (1)
Blood cell (1)
Blood serum (1)
Brown adipose tissue (1)
Buccal epithelial cell (1)
Cerebral cortex (1)
Endothelial cell (1)
Epithelial cell (1)
Flower (1)
Ileum (1)
Intestinal wall (1)
Keratinocyte (1)
Mycelium (1)
Plant cell (1)
Prefrontal cortex (1)
Primary cell (1)
Prokaryotic cell (1)
Schwann cell (1)

Disease

Parkinson's disease (4)
Breast cancer (2)
Schizophrenia (2)
Cancer (1)
Alzheimer's disease (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
Autism spectrum disorder (1)
Colon cancer (1)
Frontotemporal dementia (1)
Leishmaniasis (1)
Osteosarcoma (1)
Prostate cancer (1)
Sodium salt (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (63)
Shotgun proteomics (32)
Bottom-up proteomics (18)
Data-dependent acquisition (9)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry (4)
Top-down proteomics (4)
Data-independent acquisition (3)
Gel-based experiment (2)
SRM/MRM (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Gas Chromatography MS - positive (2)
UltraTM RNA Library Prep Kit (NEBNext®) (1)
MiRNeasy Mini Kit from Qiagen® (1)
NEBNext UltraTM RNA Library Prep Kit (1)
Trizol reagent (Invitrogen), Agilent 2100 Bioanalyzer (1)
Qiagen MinElute (1)
Illumina Hiseq 2000 (1)
AB SOLiD System 3.0 (1)
- (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Impact (1)
LTQ Orbitrap Velos (1)
MaXis (1)
Orbitrap Exploris 120 (1)
Orbitrap Fusion (1)
Q Exactive (1)
Bruker (1)
Liquid Chromatography MS - (1)

Publication Date

2025 (18)
2015 (16)
2013 (13)
2026 (12)
2024 (12)
2023 (12)
2011 (10)
2021 (9)
2020 (8)
2014 (8)
2010 (8)
2016 (7)
2012 (5)
2009 (5)
2008 (4)
2019 (4)
2018 (3)
2017 (2)
2022 (2)
2007 (1)
2002 (1)

CHEBI ID

CHEBI:27266 (3)
CHEBI:30769 (3)
CHEBI:1148 (2)
CHEBI:116314 (2)
CHEBI:137096 (2)
CHEBI:137098 (2)
CHEBI:137124 (2)
CHEBI:137125 (2)
CHEBI:15366 (2)
CHEBI:15688 (2)
CHEBI:16449 (2)
CHEBI:16811 (2)
CHEBI:17418 (2)
CHEBI:17754 (2)
CHEBI:18237 (2)
CHEBI:18257 (2)
CHEBI:20067 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26271 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:30768 (2)
CHEBI:30772 (2)
CHEBI: 132244 (1)
CHEBI: 136531 (1)
CHEBI: 15354 (1)
CHEBI: 15603 (1)

Metabolite Name

3-Benzyl-2-methyl-2-tridecanamine (2)
3-Hexenyl salicylic acid (2)
Coumarin (2)
Heptadecasphinganine (2)
Hexadecylamine (2)
Leucine (2)
Lysophosphatidilcholine (2)
Myristamide (2)
Proline (2)
Threonine (2)
Tyrosine (2)
Valine (2)
(E)-N-(2-(((3-(4-Chlorophenyl)allyl)(methyl)amino)methyl)phenyl)-N-(2-hydroxyethyl)-4-methoxybenzenesulfonamide (1)
(Z)-1,3-Octadiene (1)
1,2-Benzenedithiol (1)
1,5-Anhydroglucitol (1)
1,7-Octadiene (1)
1-Acetoxy-2-hydroxy-16-heptadecyn-4-one (1)
1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (1)
18-nonadecynoic acid (1)
2,3-Dihidro-1H-indol (1)
2,3-Dihydro-1H-pyrrolizine-5-carboxaldehyde (1)
2-(3-Phenylpropyl)tetrahydrofuran (1)
2-Acetyl-6-methylpyridine (1)
2-Nonenal, 4-oxo- (1)
2-Phenylpropionaldehyde dimethyl acetal (1)
3,3'-Iminodipropionitrile (1)
3,4-dimethylaniline (1)
3,5,7-Octatriyn-1-ol (1)
3-Benzyl-2-methyl-2-pentadecanamine (1)

First Public Date

2024 (1)
2023 (1)
2015 (1)

Study type

Transcription profiling by array (49)
RNA-seq of coding RNA (15)
Comparative genomic hybridization by array (4)
ChIP-seq (3)
RNA-seq of non coding RNA (3)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (313)
2023 (309)
2025 (290)
2021 (272)
2024 (253)
2020 (226)
2018 (149)
2019 (147)
2015 (88)
2017 (80)
2014 (70)
2016 (66)
2013 (57)
2012 (49)
2011 (43)
2010 (37)
2026 (36)
2009 (28)
2008 (19)
2007 (9)
2006 (7)
2002 (5)
2004 (3)
2005 (2)
1998 (2)
2003 (1)
2001 (1)
2000 (1)
1997 (1)

Lab affiliation

Aarhus University Department of Biomedicine DK-8000 Aarhus C (4)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (2)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin (2)
Molecular Parasitology and Entomology Unit,Laboratory of Malaria and Vector Research, National Institutes of Health. USA. (2)
Professor Fellow, American Institute for Medical and Biological Engineering Fellow, American Association for the Advancement of Science Rutgers University Department of Cell Biology and Neuroscience (2)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (lab head) (1)
Animal Medicine Department, University of Extremadura, 10003 Cáceres, Spain (1)
Arizona State University Biodesign Institute Neurodegenerative Disease Research Center (1)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Associate professor Universidad Nacional de Colombia campus Bogotá Facultad de Ciencias Departamento de Química Investigation group: Actividades Metabólicas Vegetales (1)
Barnett Institute of Chemical and Biological Analysis and Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA. (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Bioinformatics Scientist Van Andel Institute (1)
Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Kingdom of Saudi Arabia (1)
C. R., Genetics and Physiology of Microalgae, InBios/Phytosystems research unit, University of Liège, 4000 Liège, Belgium Telephone +3243663812 (1)
CINDEFI-CONICET-UNLP (1)
CNIO (1)
Center for Neurodegenerative Science Van Andel Research Institute 333 Bostwick Ave N.E., Rm 5051 Grand Rapids, MI 49503 Tel: 616-234-5262 ext. 5262 | Email: viviane.labrie@vai.org Lab website: http://labrielab.vai.org/ (1)
Center for Neurodegenerative Science, Van Andel Institute, Grand Rapids, MI, 49503 USA (1)
Chief, Molecular Parasitology and Entomology Unit Laboratory of Malaria and Vector Research National Institutes of Health (1)
Departamento de Ingeniería Química y Ambiental, Universidad Nacional de Colombia, AK 30 45-03, Bogotá, Colombia (1)
Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (1)
Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark (1)
Department of Biosciences, Durham University Durham, UK (1)
Dr. Jörn Dengjel Prof. for Biochemistry and Cell Biology Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch F +41 26 300 9741 (1)
EDyP (1)
Group leader, Professor Novo Nordisk Foundation Center for Protein Research University of Copenhagen Faculty of Health and Medical Sciences (1)
Group of Immunoproteomics, Department of Immunodynamics, Institute for Experimental Immunology and Imaging, Medical Research Centre, University Hospital Essen Hufelandstraße 55 D-45147 Essen, Germany (1)
Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Bonn, Germany (1)

Tags

xref:PubMed:38904068 (1)

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Proteome changes as consequence of altered c-di-GMP metabolism in BCG

Pellicles, a type of biofilm, have gathered a renewed interest in the field of tuberculosis as a structure that mimics some characteristics occurring during M. tuberculosis infection, such as antibiotic recalcitrance and chronicity of infection. In other bacteria, it has been well documented that th...

ORGANISM(S): Mycobacterium bovis BCG str. Pasteur 1173P2

2018-03-21 | PXD005894 | Pride

Derivation of intermediate to silicic magma from the basalt analyzed at the Vega 2 landing site, Venus.

Not available

S-EPMC5870967 | biostudies-literature

Broadly neutralizing antibodies abrogate established hepatitis C virus infection.

Not available

S-EPMC4312107 | biostudies-literature

Synthetic Study of Natural Metabolites Containing a Benzo[c]oxepine Skeleton: Heterocornol C and D.

Not available

S-EPMC10299168 | biostudies-literature

Enhanced photorespiratory and TCA pathways by elevated CO2 to manage ammonium nutrition in tomato leaves

This work aims to study wether the increment of the atmospheric carbon dioxide (CO2) concentration, in the context of climate change, will potentially allow plants to better face ammonium nutrition. Tomato (Solanum lycopersicum L.) plants were grown for 4 week with 15 mM of nitrogen, supplied as nit...

ORGANISM(S): Solanum lycopersicum

2024-11-29 | E-MTAB-14587 | biostudies-arrayexpress

Cell adhesion protein fibulin-7 and its C-terminal fragment negatively regulate monocyte and macrophage migration and functions in vitro and in vivo.

Not available

S-EPMC6103172 | biostudies-literature

Interspecies bacterial competition regulates community assembly in the C. elegans intestine.

Not available

S-EPMC8245486 | biostudies-literature

Ultracentrifugation of serum samples allows detection of hepatitis C virus RNA in patients with occult hepatitis C.

Not available

S-EPMC1933375 | biostudies-literature

Intravitreal Aflibercept in Japanese Patients with Neovascular Glaucoma: The VEGA Randomized Clinical Trial.