Vegfa - OmicsDI

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Unknown (2603)
Transcriptomics (605)
Genomics (383)
Proteomics (27)
Other (13)
Metabolomics (6)
Methylation profiling (5)
Models (3)
Clinical (1)

Organisms

Homo sapiens (433)
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Betaherpesvirinae (12)
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Xenopus laevis (3)
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Carassius auratus (2)
synthetic construct (2)
Bartonella henselae str. Houston-1 (2)
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Organisms

Homo sapiens (149)
Mus musculus (95)
Rattus norvegicus (8)
Xenopus laevis (2)
Carassius auratus (2)
Equus caballus (2)
Sus scrofa (2)
Danio rerio (2)
Macaca mulatta (1)
Canis lupus familiaris (1)
Gallus gallus (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (413)
ENA (323)
geo (256)
pride (12)
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Tissue

Cell culture (7)
Fibroblast (4)
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Embryonic stem cell (1)
Endothelial cell of coronary artery (1)
Keratinocyte (1)
Muscle cell proliferation (1)
Placenta (1)
R1 photoreceptor cell (1)
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Tendon (1)

Disease

Glioblastoma (3)
Normal (2)
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Hepatitis C virus-induced hepatocellular carcinoma (1)
Ischemic (1)
Acute erythroid leukemia (1)
Advanced atherosclerosis (1)
Non-diseased (1)
Angiogenic chondrosarcoma (1)
Adenoid cystic carcinoma (1)
Sarcoma (1)
Nodal peripheral T-cell Lymphoma (1)
Invasive ductal carcinoma (1)
Colorectal Neoplasms (1)
Acute leukemia (1)
Age related macular degeneration 1 (1)
Breast cancer (1)
Cardiovascular system disease (1)
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Wounds and Injuries (1)

Technology Type

Mass Spectrometry (12)
Fluorescence intensity (10)
MEMA (10)
Mass spectrometry (4)
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Bottom-up proteomics (3)
Data-dependent acquisition (3)
Data-independent acquisition (2)
Illumina HiSeq 2500, ILLUMINA (1)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Illumina HiSeq 4000 (7)
NextSeq 500 (4)
Illumina HiSeq 2500 (3)
- (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
Computer and Applied Biosystems 7500 Real Time PCR Systems thermal cycler (1)
GeneChip® HT HG-U133+ PM 24-Array Plate (Affymetrix); GeneTitan (Affymetrix) (1)
SensationPlus kit (Affymetrix) (1)
RNeasy Mini Kit (Qiagen); Nanodrop 1000 Spetrophotometer (Thermo Scientific); Agilent 2100 Bioanalyzer (Agilent Technologies) (1)
Agilent Technologies Scanner G2505C (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
Illumina Genome Analyzer II (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
Illumina NextSeq 500 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Bio-Rad CFX96 (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion ETD (1)
Q Exactive (1)
Q Exactive Plus (1)

Publication Date

2013 (66)
2015 (62)
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2012 (53)
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2014 (47)
2016 (43)
2011 (42)
2008 (38)
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2023 (33)
2020 (30)
2019 (27)
2010 (27)
2022 (25)
2017 (20)
2009 (19)
2021 (17)
2007 (15)
2018 (9)
2005 (3)
2006 (2)
2004 (1)
2003 (1)

UNIPROT ID/AC

P05121 (2)
P13501 (2)
Q13480 (2)
P01583 (2)
P19875 (2)
P45452 (2)
P03956 (2)
P02751 (2)
P01111 (2)
Q14766 (2)
P06756 (2)
O15105 (2)
P10145 (2)
P08069 (2)
P05019 (2)
P15692 (2)
P14780 (2)
P08254 (2)
P14174 (2)
P09341 (2)
Q03135 (2)
P01375 (2)
P35354 (2)
P05230 (2)
P11362 (2)
Q9Y6K9 (2)
O14920 (2)
O15111 (2)
P25963 (2)
Q9Y4K3 (2)

ENSEMBL ID

ENSG00000104432 (1)
ENSG00000168811 (1)
ENSG00000182866 (1)
ENSG00000125347 (1)
ENSG00000157368 (1)
ENSG00000169429 (1)
ENSG00000271503 (1)
ENSG00000106366 (1)
ENSG00000144566 (1)
ENSG00000044574 (1)
ENSG00000105664 (1)
ENSG00000137710 (1)
ENSG00000105974 (1)
ENSG00000006062 (1)
ENSG00000134308 (1)
ENSG00000284565 (1)
ENSG00000109458 (1)
ENSG00000197122 (1)
ENSG00000082701 (1)
ENSG00000124762 (1)
ENSG00000002330 (1)
ENSG00000081041 (1)
ENSG00000137801 (1)
ENSG00000102871 (1)
ENSG00000137693 (1)
ENSG00000065559 (1)
ENSG00000111536 (1)
ENSG00000145386 (1)
ENSG00000128604 (1)
ENSG00000284049 (1)

CHEBI ID

CHEBI:176874 (2)
CHEBI:176875 (2)
CHEBI:58530 (2)
CHEBI:64260 (2)
CHEBI:18299 (2)
CHEBI:9068 (2)
CHEBI:80624 (2)
CHEBI:27082 (2)
CHEBI:36761 (2)
CHEBI:16752 (2)
CHEBI:34159 (2)
CHEBI:28792 (2)
CHEBI:33283 (2)
CHEBI:28997 (2)
CHEBI:30831 (2)
CHEBI:70958 (2)
CHEBI:28689 (2)
CHEBI:139123 (2)
CHEBI:62084 (2)
CHEBI:15655 (2)
CHEBI:29042 (2)
CHEBI:17540 (2)
CHEBI:28822 (2)
CHEBI:16556 (2)
CHEBI:16024 (2)
CHEBI:32798 (2)
CHEBI:17160 (2)
CHEBI:16352 (2)
CHEBI:52449 (2)
CHEBI:30413 (1)

Metabolite Name

Betaine (3)
Sphingosine (3)
Niacinamide (3)
N6-Acetyl-L-lysine (3)
L-Lysine (3)
1-Aminocyclopropanecarboxylic acid (3)
Erucic acid (3)
Ornithine (3)
L-Arginine (3)
1-Methylhistidine (3)
L-Histidine (3)
Cis-4-Hydroxy-D-proline (3)
Choline (3)
Cytosine (3)
L-Glutamine (3)
Creatinine (3)
Creatine (3)
L-Valine (3)
L-Leucine (3)
6-Amino-6-deoxyfutalosine (2)
Indoleglycerol phosphate (2)
D-Glucose 1-phosphate (2)
5-phosphonooxy-L-lysine (2)
Se-Methylselenocysteine (2)
Pyrrolidonecarboxylic acid (2)
Hydrogen phosphate (2)
1-Pyrroline-2-carboxylic acid (2)
1-Pyrroline-4-hydroxy-2-carboxylate (2)
D-Fructose (2)
L-Cystine (2)

First Public Date

2025 (57)
2026 (53)
2024 (38)
2023 (33)
2019 (25)
2014 (24)
2022 (22)
2020 (21)
2017 (14)
2021 (13)
2015 (10)
2018 (6)
2016 (5)
2013 (2)

Modelling Approach

Boolean model (1)
Logical model (1)

Study status

Not provided (1)

Lab affiliation

Alfred E. Mann Department of Biomedical Engineering, University of Southern California, Los Angeles, CA, 90089, USA Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of USC, Los Angeles, CA, 90033, USA (1)
Barbara M. Braunger, Institute of Neuroanatomy, University Clinic Hamburg-Eppendorf, Hamburg, Germany (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, the Netherlands. (1)
Dr Ainhoa Mielgo, Tumour Microenvironment Lab, Department of Molecular and Clincial Cancer Medicine, University of Liverpool (1)
Hannover Medical School, Department of Cardiology and Angiology, Division of Molecular and Translational Cardiology, Hans Borst Center for Heart and Stem Cell Research, Hannover (1)
ICAR-CIFE Mumbai 400061 (1)
IFOM (1)
Institute of Animal Reproduction and Food Research, Polish Academy of Sciences in Olsztyn, Poland (1)
Jae Young Lee, Gwangju Institute of Science and Technology, Biomimetic materials lab (1)
Laboratory of Orthopedic Biomechanics, ETH Zurich (Department of Health Sciences and Technology) and University of Zurich (Medical Faculty) (1)
Max-Delbrück-Centrum Berlin (1)
Ri.MED Foundation (1)

Keyword

Bevacizumab (1)

IsPrivate

False (2)

Submitter Keywords

Not Peer Reviewed (1)

Study type

Transcription profiling by array (301)
RNA-seq of coding RNA (44)
ChIP-seq (13)
RNA-seq of coding RNA from single cells (11)
Comparative genomic hybridization by array (10)
Methylation profiling by array (6)
Transcription profiling by RT-PCR (5)
Unknown experiment type (3)
RNA-seq of total RNA (3)
RNA-seq of non coding RNA (3)
Cell line - Single-cell sequencing (2)
Cell line - One-color microarray (2)
MicroRNA profiling by array (2)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
Other (1)
DNA-seq (1)
Interventional (1)

Release Date

2022 (376)
2023 (352)
2021 (279)
2025 (272)
2024 (268)
2020 (235)
2019 (170)
2018 (128)
2016 (124)
2015 (123)
2017 (115)
2014 (114)
2013 (111)
2012 (94)
2011 (63)
2026 (44)
2010 (41)
2008 (41)
2009 (28)
2007 (16)
2006 (4)
2005 (3)
2003 (2)
2004 (1)

Location

France (1)

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The Inhibition of B7H3 by 2-HG Accumulation Is Associated With Downregulation of VEGFA in IDH Mutated Gliomas

B7H3 (also known as CD276) is a co-stimulator checkpoint protein of the cell surface B7 superfamily. Recently, the function beyond immune regulation of B7H3 has been widely studied. However, the expression preference and the regulation mechanism underlying B7H3 in different subtypes of gliomas is ra...

2021-05-26 | MTBLS2692 | MetaboLights

miR-200c is Aberrantly Expressed in Leiomyomas in Ethnic-Dependent Manner and Targets ZEBs, VEGFA, TIMP2 and FBLN5

mircoRNA-200c (miR-200c) through repression of specific target genes has been associated with cellular transition, tumorigenesis and tissue fibrosis. We explored the expression and functional aspects of miR-200c in genesis of leiomyomas, benign uterine tumors with fibrotic characteristic. Gain-of fu...

ORGANISM(S): Homo sapiens

2012-06-20 | E-GEOD-38817 | biostudies-arrayexpress

Focal gains of VEGFA and molecular classification of hepatocellular carcinoma

The data are derived from anonymized patient samples for which demographic information is not provided This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Homo sapiens

2008-06-22 | E-GEOD-9829 | biostudies-arrayexpress

Copy number alterations of 103 hepatocellular carcinomas with hepatitis C virus etiology

To characterize the genetic alterations that instigate hepatitis C virus-induced hepatocellular carcinoma (HCC), we conducted an integrative genomic analysis of 103 HCCs. Most tumors harbored 1q gain, 8q gain or 8p loss, with occasional alterations in 13 additional chromosome arms. In addition to ...

ORGANISM(S): Homo sapiens

2008-06-21 | E-GEOD-9845 | biostudies-arrayexpress

Total RNA expression in mouse heart tissues after injections of VEGFA-containing extracellular vessicle, lipidnanoparticles and naked-VEGFA mRNA

PRJNA908734 | ENA

Expression analysis of mouse retinas after treatment with VEGF-A or Dll4-Fc.

Transcriptional profiling of retinas extracted from mouse pups 24 hours after IVT injection (at P8) of 1 microgram VEGFA, 4 micrograms Dll4-Fc, or 4 microgram hFc alone. Goal was to determine the mechanism by which inhibiting Dll4/Notch pathway is vasoprotective during retinal development. Three-co...

ORGANISM(S): Mus musculus

2011-04-13 | E-GEOD-28516 | biostudies-arrayexpress

Two faces of bivalent domain regulate VEGFA responsiveness and angiogenesis

PRJNA578281 | ENA

Effect of IL-8 and VEGFA on polarization of tumor-associated macrophages

PRJNA1192969 | ENA

Expression of TNFR1, VEGFA, CD147 and MCT1 as early biomarkers of diabetes complications and the impact of aging on this profile

The study of new biomarkers for early detection of diabetes complications could bring new prevent approaches perspectives.

ORGANISM(S): Rattus norvegicus

2023-05-11 | E-MTAB-13000 | biostudies-arrayexpress

VEGFA Stop-gained Variant Deteriorates Cardiac Remodeling in Myocardial Infarction [RNA-seq]

PRJNA1190377 | ENA