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MetabolomicsEffects of Scytosiphon lomentaria Polysaccharides on Vibrio harveyi
The findings suggest that Scytosiphon lomentaria can influence Vibrio harveyi activity and host response, providing potential applications for disease control.
2026-05-15 | MTBLS14431 | MetaboLights
MetabolomicsThe impact of persistent colonization by Vibrio fischeri on the metabolome of the host squid Euprymna scolopes

Associations between animals and microbes affect not only the immediate tissues where they occur, but also the entire host. Metabolomics, the study of small biomolecules generated during metabolic processes, provides a window into how mutualistic interactions shape host biochemistry. The Hawaiian...

2020-07-02 | MTBLS1186 | MetaboLights
MetabolomicsMulti-omics analysis of differential expression profiles in Vibrio natriegens strain VCOD-2 under optimal and high-salinity conditions

This study employs integrated multi-omics analysis to systematically investigate the proteome and metabolome of marine bacterium Vibrio natriegens strain VCOD-2 (ATCC 14048) under optimal salinity (3% NaCl) and high-salinity stress (8% NaCl) conditions, aiming to reveal the molecular me...

2026-03-18 | MTBLS14070 | MetaboLights
TranscriptomicsWhole transcriptome profiling of successful immune response to Vibrio infections in the oyster Crassostrea gigas by digital gene expression analysis
The cultivated Pacific oyster Crassostrea gigas has suffered for decades large scale summer mortality phenomenon resulting from the interaction between the environment parameters, the oyster physiological and/or genetic status and the presence of pathogenic microorganisms including Vibrio species. T...
ORGANISM(S): Crassostrea gigas 
2011-11-01 | E-GEOD-33390 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Vibrio cholerae wild-type and dbfS, dbfQ, and dbfR(D51V) mutant strains
RNA-seq was performed to characterize transcriptional changes governed by the DbfRS two-component signaling system in Vibrio cholerae. The experiment compared global gene expression in wild-type and mutant strains lacking dbfS or dbfQ, as well as a phospho-dead dbfR(D51V) variant. Cultures were grow...
ORGANISM(S): Vibrio cholerae 
2025-11-20 | E-MTAB-16165 | biostudies-arrayexpress
GenomicsChIP-seq analysis of the Vibrio cholerae AphA protein
The experiment contains ChIP-seq data for Vibrio cholerae strain E7946. The strain was grown at 37 degrees in LB medium and crosslinked with 1 % (v/v) formaldehyde. After sonication, to break open cells and fragment DNA, immunoprecipitations were done using anti-FLAG antibodies. Libraries were prepa...
ORGANISM(S): Vibrio cholerae 
2019-10-21 | E-MTAB-7953 | biostudies-arrayexpress
ProteomicsVibrio cholerae VesB Analysis-posttranslational modifications
Identification of post translational modifications on Vibrio cholerae protein VesB (from purified VesB and culture supernatant) using in-gel digestion with trypsin, LC-MS/MS, database searching.
ORGANISM(S): Vibrio cholerae 
2019-01-25 | PXD003261 | Pride
Protein profiling Vibrio cholerae Lc-ms/ms 
GenomicsChIP-seq of the cyclic-AMP Receptor Protein (CRP) and RNA polymerase sigma 70 subunit in Vibrio cholerae
The experiment contains ChIP-seq data for Vibrio cholerae strain N16961. The strain was grown at 37 degrees in M9 minimal medium and crosslinked with 1 % (v/v) formaldehyde. After sonication, to break open cells and fragment DNA, immunoprecipitations were done using no antibodies (mock immunoprecipi...
ORGANISM(S): Vibrio cholerae 
2019-02-04 | E-MTAB-6472 | biostudies-arrayexpress
TranscriptomicsVibrio cholerae CRP Footprint-seq
We used ATAC-seq to identify the genome-wide binding of CRP in Vibrio Cholerae
ORGANISM(S): Vibrio cholerae 
2026-09-04 | E-MTAB-17602 | biostudies-arrayexpress
ProteomicsVibrio coralliilyticus T6SS comparative proteomics
Comparative proteomics to identify the proteins secreted by T6SS1 and T6SS2 of Vibrio coralliilyticus strains BAA-450, OCN008, and OCN014.
ORGANISM(S): Vibrio coralliilyticus ATCC BAA-450 Vibrio coralliilyticus OCN008 
2024-02-29 | PXD049479 | Pride
Secretion Toxin Comparative Effector Vibrio coralliilyticus T6ss 
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