Vieira J J - OmicsDI

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Unknown (1469)
Proteomics (31)
Transcriptomics (9)
Metabolomics (8)
Genomics (6)
Genomic (2)

Organisms

Andropogon gerardi (30)
Bacteria (30)
Bartonella quintana JK 31 (30)
Canis lupus familiaris (30)
Cnidaria (30)
Ectopseudomonas oleovorans CECT 5344 (30)
Ensifer adhaerens (30)
Halictus scabiosae (30)
Human immunodeficiency virus 1 (30)
Mesocricetus auratus (30)
Miscanthus x giganteus (30)
Morchella importuna (30)
Mus musculus (30)
Panicum virgatum (30)
Pseudomonas aeruginosa PA103 (30)
Pseudomonas aeruginosa SJTD-1 (30)
Rabies virus Nishigahara RCEH (30)
Rattus norvegicus (30)
Rattus rattus (30)
Rhodococcus jostii RHA1 (30)
Rhodopseudomonas palustris (30)
Shigella (30)
Sorghastrum nutans (30)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (30)
Streptococcus pneumoniae (30)
Homo sapiens (8)
Drosophila melanogaster (2)
Macaca mulatta (1)
Sus scrofa (1)
Mus musculus (1)

Repository

pride (30)
biostudies-arrayexpress (9)
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Tissue

Cell culture (6)
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Otolith organ (1)
Primary cell (1)
Prostate adenocarcinoma cell (1)
Regular cardiac myocyte (1)

Disease

COVID-19 (3)
Diamond-Blackfan anemia (1)
Major depressive disorder (1)
Neuroblastoma (1)
Obesity (1)
Polycystic Kidney (1)
Prostate adenocarcinoma (1)
Renal cell carcinoma (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (18)
Mass spectrometry (8)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (3)
HDMSE (3)
Data-dependent acquisition (2)
Top-down proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (2)
Hamamatsu Nanozoomer S60 (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
Becton Dickinson INFLUX (1)
Illumina NovaSeq 6000 (1)
Orbitrap Fusion Lumos (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2022 (13)
2021 (7)
2026 (5)
2018 (4)
2025 (4)
2023 (4)
2020 (3)
2019 (3)
2011 (2)
2024 (2)
2017 (1)

CHEBI ID

CHEBI:15834 (2)
CHEBI:6052 (2)
CHEBI:42255 (2)
CHEBI:71225 (2)
CHEBI:30200 (2)
CHEBI:30778 (2)
CHEBI:8198 (2)
CHEBI:68352 (2)
CHEBI:168023 (2)
CHEBI:76095 (2)
CHEBI:27589 (2)
CHEBI:75632 (2)
CHEBI:75633 (2)
CHEBI:90 (2)
CHEBI:31799 (2)
CHEBI:74793 (2)
CHEBI:31985 (2)
CHEBI:15603 (2)
CHEBI:29016 (2)
CHEBI:36281 (2)
CHEBI:23053 (2)
CHEBI:17202 (2)
CHEBI:17620 (2)
CHEBI:26267 (1)
CHEBI:189577 (1)
CHEBI:189581 (1)
CHEBI:189579 (1)
CHEBI:167536 (1)
CHEBI:167539 (1)
CHEBI:167531 (1)

Metabolite Name

Epigallocatechin (2)
Gallocatechin (2)
Gallic acid (2)
Trans-piceid (2)
Caffeic acid (2)
Trans-coutaric acid (2)
Isorhamnetin (2)
Flavan-3ol-hexoside (1)
Syringetin 3-O-(6-acetyl)-glucoside (1)
Isorhamnetin 3-O-(6-acetyl)-glucoside (1)
Laricitrin 3-O-(6"-acetyl)-glucoside (1)
Caftaric sulfo (1)
2-S-glutathionyl-caffeoylcaftaric acid (1)
Proanthocyan (1)
Proanthocyanidin type B (1)
Procyanidin A (1)
Caffeic acid sulfonate (1)
Uridine monophosphate or pseudouridine monophosphate (1)
Uridine or pseudouridine (1)
Dihydroisorhamnetin sulfonate or petunidin sulfonate derivate (1)
Proanthocyanidin 4-beta-sulfonate (1)
Quercetin or luteolin rutinosde (1)
Quercetin-xyloside (1)
Pantotheine SO3H (1)
Galloyl hexoside (1)
Ferulic acid-O-glucoside (1)
Epicatechin-4-beta-sulfonates (1)
Caffeic acid+catechin condesation product (1)
Trans-piceatannol (1)
Luteolin-7-glucoside (1)

First Public Date

2019 (2)

Study type

RNA-seq of coding RNA (3)
Transcription profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Human - Single-cell sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (183)
2025 (182)
2023 (181)
2021 (172)
2024 (154)
2020 (116)
2019 (99)
2018 (75)
2017 (65)
2016 (55)
2015 (39)
2026 (31)
2014 (31)
2013 (20)
2011 (15)
2012 (15)
2010 (13)
2009 (11)
2006 (6)
2008 (4)
2007 (4)
2003 (3)
2005 (2)
2001 (2)

Lab affiliation

Max-Delbrueck-Centre for Molecular Medicine (MDC), Berlin, Germany. (3)
Biocenter, Faculty of Biology, Genetics Ludwig-Maximilians-University Munich (LMU) 82152 Martinsried, Germany (2)
Analytical Biochemistry and Proteomics Unit (1)
Associate professor at University of Campinas-SP (UNICAMP-SP) (1)
Biocenter, Faculty of Biology, Genetics Ludwig-Maximilians-University Munich (LMU) 82152 Martinsried, Germany (1)
Biocenter, Faculty of Biology, Genetics, Ludwig-Maximilians-University Munich (LMU), 82152 Martinsried, Germany (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Centre for Genomic Regulation, Barcelona, Spain (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil (1)
Department of Medical Sciences, Institute of Biomedicine (iBiMED), University of Aveiro, 3810-193 Aveiro, Portugal. (1)
Direktor Institut für Neuroanatomie und Zellbiologie Medizinische Hochschule Hannover (MHH) (1)
Goethe university, Institute of Biochemistry II (1)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt, Germany (1)
Institute of Molecular Biology (IMB), Chromatin Biology & Proteomics, Mainz, Germany Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg-Universität, Mainz, Germany (1)
Laboratory for Structural and Computational Proteomics; Fiocruz - Paraná (1)
Laboratory of Cell Growth Control by Nutrients, Inserm U1151, Necker Enfants Malades Institute (INEM), Faculté de Médecine Paris Descartes, Leriche Building 14 Rue Maria Helena Vieira da Silva Paris 75014 France (1)
Laboratory of Neuroproteomics - Unicamp (1)
Professor at Goethe University Frankfurt, Director of Institute of Biochemistry 2 and a fellow of Max Planck Society. (1)
Proteome Dynamics, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Robert-Rössle-Str. 10, 13125 Berlin, Germany (1)
Proteome Dynamics, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Robert-Rössle-Str. 10, 13125 Berlin, Germany Charité -Universitätsmedizin Berlin, 10117 Berlin, Germany (1)
Proteomics Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Unicamp (1)
Univ. Grenoble Alpes, CEA, INSERM, IRIG, BGE, F-38000 Grenoble, France (1)
University of California, Los Angeles, USA (1)
University of Campinas - São Paulo - Brazil (1)
University of Copenhagen Department of Biomedical Sciences Integrative Circulation Division Blegdamsvej 3B København N, DK-2200 (1)
University of Fortaleza (1)

Tags

xref:PubMed:32199375 (1)

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Retinal degeneration mutation in Sftpa1tm1Kor/J and Sftpd -/- targeted mice.

Not available

S-EPMC6029784 | biostudies-literature

Complete Genome Sequence of Cluster J Mycobacteriophage Superphikiman.

Not available

S-EPMC5794948 | biostudies-literature

A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.

Not available

S-EPMC8194189 | biostudies-literature

Independent recruitment of Igh alleles in V(D)J recombination.

Not available

S-EPMC4351640 | biostudies-literature

Fusarium and allied fusarioid taxa (FUSA). 1.

Not available

S-EPMC9355104 | biostudies-literature

Antiproliferative and Pro-Oxidant Effect of Polyphenols in Aqueous Leaf Extract of Passiflora alata Curtis on Activated T Lymphocytes from Non-Obese Diabetic (NOD SHILT/J) Mice.

Not available

S-EPMC9405454 | biostudies-literature

Safety and efficacy of a freeze-dried trivalent antivenom for snakebites in the Brazilian Amazon: An open randomized controlled phase IIb clinical trial.

Not available

S-EPMC5720814 | biostudies-literature

Capacitive electrical stimulation effects on osteoblast-released matrix microvesicles

Passive implants currently used in the clinics cannot prevent failure rates and inherent revision arthroplasties. Novel bioelectronic devices that include biophysical stimulators (such as electric stimulators) and sensing systems are desired since these will allow for long-term monitoring and contro...

ORGANISM(S): Mus musculus (Mouse)

2021-11-29 | PXD028551 | Pride

Photobiomodulation Therapy to Treat Snakebites Caused by Bothrops atrox: A Randomized Clinical Trial.

Not available

S-EPMC10696517 | biostudies-literature

Omics analysis of a vanB1 Enterococcus faecalis strain

iTRAQ and RNA-Seq applied in the evaluation of antibiotic stress in multidrug resistant vanB1 Enterococcus faecalis strain. Authors: L. Pinto, C. Torres, C. Gil, J. A. Reales-Calderón, V. Borges, J. P. Gomes, C. Silva, L. Vieira, P. Poeta, G. Igrejas

PRJEB34147 | ENA

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1525 Results

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