Vincent D D - OmicsDI

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Unknown (1813)
Transcriptomics (309)
Genomics (157)
Proteomics (61)
Metabolomics (26)
Models (13)
Genomic (1)

Organisms

Homo sapiens (257)
Mus musculus (100)
Arabidopsis thaliana (50)
Saccharomyces cerevisiae (14)
Actinobacillus pleuropneumoniae (7)
Rattus norvegicus (7)
Sus scrofa (7)
Trypanosoma brucei (6)
Drosophila melanogaster (6)
Escherichia coli (5)
Danio rerio (4)
Caenorhabditis elegans (3)
Triticum aestivum (3)
Sparus aurata (2)
Populus trichocarpa (2)
Gallus gallus (2)
Candida albicans (2)
Chordata (1)
Invertebrate iridescent virus 6 (1)
Arabis alpina (1)
Neisseria gonorrhoeae F62 (1)
Pinus radiata (1)
Agrobacterium larrymoorei (1)
Arabidopsis lyrata (1)
Streptococcus thermophilus (1)
Macaca mulatta (1)
Trypanosoma brucei brucei (1)
Xenopus tropicalis (1)
Brassica napus (1)
Oryza sativa Indica Group (1)

Organisms

Artibeus lituratus (3)
Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (341)
EGA (120)
pride (33)
MetaboLights (22)
MassIVE (20)
BioModels (13)
ENA (6)
PanoramaPublic (5)
GNPS (4)
jPOST (2)
dbGaP (1)
geo (1)

Tissue

Cell culture (7)
Epithelial cell (3)
Liver (3)
Blood plasma (2)
Colon (2)
Heart (2)
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Plant cell (2)
Bile (1)
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Blood-lymph (1)
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Brain (1)
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Fibroblast (1)
Fibroblast of dermis (1)
Hepatocyte (1)
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Lung (1)
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Macrophage (1)
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Muscle (1)
Nerve (1)
Oocyte (1)
Ovarian surface epithelial cell (1)
Pancreas (1)
Permanent cell line cell (1)
Phloem (1)

Disease

Colon cancer (3)
Melanoma (2)
Acute leukemia (2)
Prostate adenocarcinoma (2)
Benign glioma (1)
Glucocorticoid-remediable aldosteronism (1)
Systemic lupus erythematosus (1)
Breast adenocarcinoma (1)
Brain cancer (1)
Breast cancer (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Dilated cardiomyopathy (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Malignant neoplasm of ovary (1)
Malignant peripheral nerve sheath tumor (1)
Neuroblastoma (1)
Ovarian carcinoma (1)
Pancreatic cancer (1)
Peripheral primitive neuroectodermal tumor (1)
Prostate cancer (1)
Renal Wilms' tumor (1)
Retinoblastoma (1)
Stomach cancer (1)
Synovial sarcoma (1)

Technology Type

Mass Spectrometry (33)
Mass spectrometry (22)
Shotgun proteomics (17)
Bottom-up proteomics (9)
Illumina HiSeq 2000 (6)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (2)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Affymetrix OncoScan FFPE Express (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Illumina HumanHap 550 (1)
Illumina OncoArray (1)
Illumina_660K/Illumina_670K (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

NextSeq 500 (14)
Illumina HiSeq 2500 (9)
Illumina HiSeq 4000 (7)
Orbitrap Fusion Lumos (5)
Q Exactive (5)
Illumina NovaSeq 6000 (4)
Q Exactive HF (3)
Axon- GenePix4000B (2)
Illumina NovaSeq X (2)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap XL (2)
Q Exactive GC-MS Orbitrap (Thermo Scientific) (2)
Orbitrap Exploris 480 (2)
Vanquish UPLC-ESI-LTQ-Orbitrap mass analyser (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Quiagen Mini prep kit (1)
10X Genomics Chromium Controller (1)
MoFlo XDP (beckmancoulter) (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 2000 (1)
Orbitrap Fusion (1)
LTQ (1)
LTQ Orbitrap Elite (1)

Publication Date

2011 (53)
2014 (45)
2012 (38)
2015 (37)
2013 (32)
2010 (31)
2022 (22)
2016 (22)
2008 (18)
2018 (17)
2024 (15)
2021 (15)
2017 (13)
2025 (13)
2020 (11)
2019 (11)
2026 (9)
2009 (9)
2007 (9)
2023 (7)
2004 (6)
2005 (4)
2006 (3)

UNIPROT ID/AC

Q9GRG6 (5)
P01019 (1)
P17252 (1)
P25098 (1)
P27361 (1)
P30556 (1)
P32121 (1)
P34947 (1)
P35626 (1)
P43250 (1)
P49407 (1)
P63092 (1)

CHEBI ID

CHEBI:13389 (6)
CHEBI:14336 (6)
CHEBI:15361 (6)
CHEBI:15379 (6)
CHEBI:15422 (6)
CHEBI:16027 (6)
CHEBI:16526 (6)
CHEBI:16761 (6)
CHEBI:16908 (6)
CHEBI:17138 (6)
CHEBI:17234 (6)
CHEBI:17754 (6)
CHEBI:17794 (6)
CHEBI:18021 (6)
CHEBI:28874 (6)
CHEBI:40595 (6)
CHEBI:4170 (6)
CHEBI:57642 (6)
CHEBI:16474 (5)
CHEBI:17842 (5)
CHEBI:18009 (5)
CHEBI:35490 (5)
CHEBI:48928 (5)
CHEBI:58121 (5)
CHEBI:58273 (5)
CHEBI:28757 (2)
CHEBI:33942 (2)
CHEBI:17962 (1)
CHEBI:28445 (1)
CHEBI:33842 (1)

Metabolite Name

Xanthine (6)
Adenine (5)
L-Alanine (5)
L-Phenylalanine (5)
L-Serine (5)
L-Threonine (5)
Uracil (5)
Acetylcholine (4)
Creatinine (4)
D-Glucose (4)
Diethanolamine (4)
Hypoxanthine (4)
L-Arginine (4)
L-Asparagine (4)
L-Glutamine (4)
L-Histidine (4)
L-Proline (4)
L-Valine (4)
Lactate (4)
Pyruvate (4)
Sphinganine (4)
Taurine (4)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (3)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (3)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (3)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (3)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (3)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (3)
1-methylhistamine (3)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (3)

First Public Date

2024 (5)
2014 (1)

Modelling Approach

Ordinary differential equation model (12)

Lab affiliation

Metastases Research Laboratory, GIGA-CANCER, University of LIEGE, BELGIUM (2)
1-Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404 Illkirch, France; 2-Centre National de la Recherche Scientifique (CNRS), UMR7104, 67404 Illkirch, France; 3-Institut National de la Santé et de la Recherche Médicale (INSERM), U1258, 67404 Illkirch, France 4-Université de Strasbourg, 67404 Illkirch, France (1)
1. Environmental Health Science and Research Bureau, HECSB, Health Canada, Ottawa, ON 2. Interdisciplinary School of Health Sciences, Faculty of Health Sciences, University of Ottawa, Ottawa, ON (1)
Aarhus University Institute of Molecular Biology and Genetics Universitetsbyen 81 8000 Aarhus Denmark (1)
AgriBio centre, Department of Economic Development, government of Victoria, Australia (1)
Basic Immune System of Plants / Protein Mass SpectrometryMax Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Biochemistry and Molecular Biology (1)
Biological and Life Sciences, Lancaster University (1)
Breast Cancer Now The Institute of Cancer Research (1)
Center For Viticultutre and Small Fruits Florida A&M University Tallahassee, FL 32317 (1)
Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore (1)
Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH),Stockholm, Sweden (1)
Dr Stéphane VINCENT, PhD, HDR Chargé de recherche INSERM INSERM/CNRS/Université de Strasbourg IGBMC/UMR 7104/U1258 1, rue Laurent Fries BP 10142 67404 ILLKIRCH CEDEX FRANCE Tel: +33 (0)3 88 65 34 25 Fax: +33 (0)3 88 65 32 01 (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
IPSIM, INRAE, Montpellier, France (1)
Innovative Genomics Institute, Room 212C 2151 Berkeley Way Berkeley CA 94720 (1)
Institut Curie, Paris Sciences et Lettres Research University, INSERM U934/ CNRS, UMR3215 (1)
Institut de Génétique et de Biologie Moléculaire et Cellulaire, 67404 Illkirch, France (1)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (1)
Laboratoire de Génétique Ophtalmologique, INSERM U1163, Institut Imagine, Paris, France (1)
Laboratoire mixte UMR 5240 CNRS/INSA/UCBL/Bayer CropScience, Plateforme de protéomique, F-69263 Lyon, France (1)
Marseille Proteomique, Inserm U1068, CNRS UMR7258, Aix Marseille Université U105 (1)
Massachusetts General Hospital (1)
McGill University - Rosalind & Morris Goodman Cancer Institute (1)
National Institute for Agricultural Research (1)
PI. Associate Professor Department of Plant and Microbial Biology. UCB. (1)
Reader In Cell Signalling & Proteomics, Barts Cancer Institute (1)
Saarland University, Medical Biochemistry & Molecular Biology, Center for Molecular Signaling, PZMS, Kirrberger Straße 100, 66421 Homburg (Saar), Germany (1)
Translational Genomics Research Institute (1)
Univ. Lille, U1286 – INFINITE – Institute for Translational Research in Inflammation, F59000 Lille, France (1)

IsPrivate

False (13)

Model Flag

Non Kinetic (1)

Modification

15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (181)
RNA-seq of coding RNA (42)
ChIP-chip by tiling array (32)
ChIP-seq (26)
Comparative genomic hybridization by array (7)
RNA-seq of non coding RNA (7)
ChIP-chip by array (5)
Methylation profiling by array (5)
RNA-seq of coding RNA from single cells (5)
Unknown experiment type (4)
Genotyping by array (3)
Other (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by SAGE (2)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
DNA-seq (2)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)
Hi-C (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2021 (223)
2022 (197)
2025 (182)
2023 (178)
2024 (170)
2020 (168)
2018 (121)
2016 (107)
2015 (103)
2019 (97)
2014 (94)
2013 (87)
2011 (78)
2012 (77)
2017 (69)
2010 (60)
2008 (32)
2026 (31)
2009 (20)
2007 (16)
2006 (10)
2005 (8)
2004 (6)
2002 (5)
2001 (5)
2003 (4)
2000 (3)
1998 (2)
1996 (1)

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Vitamin D supplementation decreases serum 27-hydroxycholesterol in a pilot breast cancer trial.

Not available

S-EPMC6381934 | biostudies-literature

N-methyl-D-aspartate antibody encephalitis: temporal progression of clinical and paraclinical observations in a predominantly non-paraneoplastic disorder of both sexes.

Not available

S-EPMC2877907 | biostudies-literature

Serum 25-hydroxyvitamin D concentrations and treatment outcomes of women undergoing assisted reproduction.

Not available

S-EPMC4997293 | biostudies-literature

A Multiple Protease Strategy to Optimise the Shotgun Proteomics of Mature Medicinal Cannabis Buds.

Not available

S-EPMC6888629 | biostudies-literature

D-Amphetamine Rapidly Reverses Dexmedetomidine-Induced Unconsciousness in Rats.

Not available

S-EPMC8167047 | biostudies-literature

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter)

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D (with ATP:ADP antiporter) There are six models (Model A, B, C, C-fruc, D, D-fruc) described in the paper. Model A ( BIOMD0000000513 ) is the model developed originally by Achar et al. ...

2024-09-02 | BIOMD0000000511 | BioModels

Relationship Between Vitamin D Receptor Gene BsmI Polymorphism and 25-Hydroxyvitamin D Total Levels in Slovak Postmenopausal Women with Reduced Bone Mineral Density.

Not available

S-EPMC11941902 | biostudies-literature

Habralictus and Lasioglossum of Saint Lucia and Saint Vincent and the Grenadines, Lesser Antilles (Hymenoptera, Apoidea, Halictidae).

Not available

S-EPMC8956565 | biostudies-literature

Impact of dietary vitamin D on initiation and progression of oral cancer.

Not available

S-EPMC7166186 | biostudies-literature

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D in fructose medium (with ATP:ADP antiporter)

Kerkhoven2013 - Glycolysis and Pentose Phosphate Pathway in T.brucei - MODEL D in fructose medium (with ATP:ADP antiporter) There are six models (Model A, B, C, C-fruc, D, D-fruc) described in the paper. Model A ( BIOMD0000000513 ) is the model developed original...

2024-09-02 | BIOMD0000000516 | BioModels

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