Vira - OmicsDI

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Transcriptomics (1864)
Proteomics (192)
Genomics (114)
Unknown (92)
Metabolomics (57)
Other (5)
Multiomics (4)

Organisms

Homo sapiens (844)
Mus musculus (540)
Gallus gallus (69)
Sus scrofa (32)
Arabidopsis thaliana (32)
Macaca mulatta (27)
Rattus norvegicus (26)
Drosophila melanogaster (19)
Caenorhabditis elegans (17)
Bos taurus (15)
Aedes aegypti (13)
Chlorocebus sabaeus (11)
Macaca fascicularis (11)
Solanum tuberosum (11)
Mustela putorius furo (10)
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Saccharomyces cerevisiae (10)
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Canis lupus familiaris (9)
Viruses (8)
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Oncorhynchus mykiss (7)
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Oryza sativa Indica Group (5)
Felis catus (5)
Emiliania huxleyi (5)
Mesocricetus auratus (5)

Organisms

Pseudomonas chlororaphis subsp. aureofaciens (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (1951)
MassIVE (173)
MetaboLights (57)
EGA (30)
PanoramaPublic (6)
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geo (1)
pride (1)

Disease

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12 DAI with PepMV-EU isolate (1)
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HIV (1)
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Technology Type

Mass spectrometry (39)
Mass spectrometry assay (15)
ILLUMINA, Illumina HiSeq 2000 (3)
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Illumina MiSeq, HiSeq X Ten, NextSeq 500, Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HumanOmniExpress-12 v1., Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
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Instrument Platform

NextSeq 500 (51)
Illumina NovaSeq 6000 (31)
Illumina HiSeq 2500 (27)
Illumina HiSeq 2000 (22)
Illumina MiSeq (17)
Illumina HiSeq 4000 (16)
NextSeq 550 (13)
Illumina HiSeq 1500 (12)
Illumina Genome Analyzer IIx (8)
Illumina Genome Analyzer II (5)
HiSeq X Ten (4)
MA900, Sony (2)
10x Chromium Controller (2)
ScanArray 5000 [PerkinElmer] (2)
G2565AA DNA microarray scanner [Agilent] (2)
G2565BA DNA microarray scanner [Agilent] (2)
Scanning hardware (2)
NextSeq 2000 (2)
BGISEQ-500 (2)
Illumina HiSeq 3000 (2)
NanoString nCounter (1)
HIVE computer cluster (1)
Bio-Rad T100 Thermocycler (1)
RNA purity was determined by using NanoDrop spectrophotometer ND-2000 (Thermo Fischer Scientific) through the evaluation of the absorbance ratio A260/A280 (1)
ELITeInGenius SP RNA cartridge (ELITechGroup) via ELITeInGenius fully automated system (ELITechGroup) (1)
Local workstation (1)
Chromium Single Cell 5' Library & Gel Bead Kit v2 (1)
FLOQSwab (Copan) (1)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University (1)
Cell culture laboratory, BSL-3 lab (1)

Publication Date

2013 (260)
2015 (254)
2012 (238)
2014 (231)
2016 (181)
2011 (169)
2010 (166)
2008 (106)
2009 (74)
2021 (67)
2022 (64)
2020 (57)
2017 (51)
2023 (46)
2007 (45)
2018 (35)
2024 (34)
2025 (31)
2019 (29)
2005 (18)
2026 (13)
2006 (9)
2004 (6)

UNIPROT ID/AC

M1B545_SOLTU (1)
M1CVA7_SOLTU (1)
M1CB27_SOLTU (1)
M1AS38_SOLTU (1)
M1CZE6_SOLTU (1)
M1ACL7_SOLTU (1)
M0ZPM9_SOLTU (1)
M1BVM5_SOLTU (1)
M1AD01_SOLTU (1)
M1C9W6_SOLTU (1)
HNF1B_HUMAN (1)
M1DBX3_SOLTU (1)
M1B3W8_SOLTU (1)
M1BWE4_SOLTU (1)
M1CWN2_SOLTU (1)
PSBR_SOLTU (1)
M1AG69_SOLTU (1)
4113.PGSC0003DMT400013958 (1)
M1CFI4_SOLTU (1)
M1BQ50_SOLTU (1)
M1AM23_SOLTU (1)
M1AC27_SOLTU (1)
M1D0F0_SOLTU (1)
Q2XPW1_SOLTU (1)
M1C8L3_SOLTU (1)
M1BI71_SOLTU (1)
M1ATE7_SOLTU (1)
RBS1_SOLTU (1)
4113.PGSC0003DMT400052643 (1)
M1C0G3_SOLTU (1)

CHEBI ID

CHEBI:16704 (7)
CHEBI:16449 (6)
CHEBI:26986 (6)
CHEBI:18186 (6)
CHEBI:27897 (6)
CHEBI:18012 (6)
CHEBI:17596 (6)
CHEBI:16335 (6)
CHEBI:15741 (6)
CHEBI:66848 (5)
CHEBI:64525 (5)
CHEBI:27266 (5)
CHEBI:25017 (5)
CHEBI:28300 (5)
CHEBI:18237 (5)
CHEBI:16811 (5)
CHEBI:22660 (5)
CHEBI:28044 (5)
CHEBI:30915 (5)
CHEBI:17562 (5)
CHEBI:16750 (5)
CHEBI:72998 (4)
CHEBI:64446 (4)
CHEBI:64504 (4)
CHEBI:64520 (4)
CHEBI:64523 (4)
CHEBI:64433 (4)
CHEBI:64424 (4)
CHEBI:64516 (4)
CHEBI:64517 (4)

Metabolite Name

Uridine (5)
Adenosine (5)
Pyroglutamic acid (4)
Cytidine (4)
Inosine (4)
Guanosine (4)
Inosine (4)
2'-O-methylcytidine (3)
Dimethylglycine (3)
1-methyladenosine (3)
Valine (3)
Citrulline (3)
Serine (3)
Tryptophan (3)
Threonine (3)
Sarcosine (3)
Phenylalanine (3)
Isoleucine (3)
2'-O-methyluridine (3)
Pseudouridine (3)
7-methylguanosine (3)
Lactate (3)
Thymine (3)
Creatine (3)
Adenine (3)
Carnosine (3)
Citric acid (3)
TAG 59:12 (15:0/22:6/22:6) (2)
TAG 55:7 (15:0/18:1/22:6) (2)
TAG 55:6 (15:0/18:0/22:6) (2)

First Public Date

2026 (1)
2025 (1)
2019 (1)
2018 (1)
2014 (1)

Study type

Transcription profiling by array (1312)
RNA-seq of coding RNA (236)
RNA-seq of non coding RNA (78)
ChIP-seq (54)
Other (42)
Unknown experiment type (23)
RNA-seq of coding RNA from single cells (21)
DNA-seq (19)
Cell line - High-throughput sequencing (15)
Comparative genomic hybridization by array (15)
Methylation profiling by array (12)
RNA-seq of total RNA (12)
ChIP-chip by tiling array (11)
Genotyping by array (11)
Ribo-seq (10)
Transcription profiling by SAGE (6)
Transcription profiling by RT-PCR (6)
Genotyping by high throughput sequencing (6)
Methylation profiling by high throughput sequencing (6)
MicroRNA profiling by high throughput sequencing (5)
Animal - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
One-color microarray (3)
Plant - High-throughput sequencing (3)
High-throughput sequencing (3)
RNAi profiling by array (3)
ChIP-chip by array (3)
MicroRNA profiling by array (3)
Proteomic profiling by array (3)
Cell line - Single-cell sequencing (2)

Release Date

2013 (262)
2015 (251)
2012 (239)
2014 (231)
2011 (170)
2010 (168)
2016 (148)
2008 (108)
2009 (74)
2022 (57)
2021 (53)
2007 (47)
2020 (40)
2017 (35)
2023 (30)
2019 (27)
2018 (25)
2024 (19)
2005 (19)
2025 (12)
2006 (10)
2026 (9)
2004 (6)
2002 (1)
1999 (1)
1998 (1)

Lab affiliation

Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (1)

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Shigella flexneri effectors IpaJ and VirA globally impair host conventional secretion

Intracellular trafficking pathways in eukaryotic cells are essential to maintain organelle identity and structure, and to regulate cell communication with its environment. Shigella flexneri invades and subverts the human colonic epithelium by the injection of virulence factors through a type 3 secre...

ORGANISM(S): Shigella flexneri

2019-06-04 | PXD012291 | Pride