Viral immunology

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Unknown (20597)
Genomics (489)
Proteomics (98)
Transcriptomics (65)
Metabolomics (12)
Other (5)
Models (2)
Genomic (1)

Organisms

Methylocystis sp. (77)
Streptomyces coelicolor (77)
Pseudomonas aeruginosa PA103 (77)
Artibeus jamaicensis (77)
Morchella importuna (77)
Sclerotinia sclerotiorum (77)
Brassica napus (77)
Oryza sativa (77)
Halobacterium salinarum (77)
Streptococcus pneumoniae D39 (77)
human gut metagenome (77)
Streptococcus pneumoniae R6 (77)
Apis mellifera ligustica (77)
Canis lupus x Canis lupus familiaris (77)
Scaphoideus titanus (77)
Streptococcus pneumoniae (77)
Avena strigosa (77)
Homo sapiens (62)
Mus musculus (19)
Oncorhynchus mykiss (2)
Canis lupus familiaris (2)
Influenza A virus (1)
gut metagenome (1)
Oreochromis niloticus (1)
Macaca mulatta (1)
Oryctolagus cuniculus (1)
Bos taurus (1)
Artibeus jamaicensis (1)
Danio rerio (1)
Porcine epidemic diarrhea virus (1)

Organisms

Mus musculus (228)
Homo sapiens (165)
Severe acute respiratory syndrome coronavirus 2 (7)
Macaca mulatta (5)
Human gammaherpesvirus 8 (4)
Danio rerio (4)
Bos taurus (3)
Aedes aegypti (2)
Oncorhynchus mykiss (2)
Abalone asfa-like virus (1)
Murid gammaherpesvirus 4 (1)
Pan troglodytes (1)
Bat coronavirus (1)
Artibeus jamaicensis (1)
Chlorocebus sabaeus (1)
human gammaherpesvirus 4 (1)
Human immunodeficiency virus 1 (1)
Mustela putorius furo (1)
Acanthamoeba castellanii (1)
Dicentrarchus labrax (1)
Salmo salar (1)
Scophthalmus maximus (1)
Respiratory syncytial virus (1)
Mesocricetus auratus (1)
viral metagenome (1)
Gallus gallus (1)
Canis lupus familiaris (1)
Rattus norvegicus (1)

Repository

ENA (482)
pride (77)
biostudies-arrayexpress (56)
geo (30)
MetaboLights (12)
MassIVE (7)
BioModels (2)
EGA (2)
dbGaP (1)
GPMDB (1)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (25)
Epithelial cell (9)
B cell (5)
Fibroblast (5)
T cell (5)
Blood plasma (5)
Extracellular vesicle (3)
Lung (3)
Hepatocyte (3)
Skin mucus (2)
Semen (2)
Epithelial cell of cervix (2)
Permanent cell line cell (2)
Cell suspension culture (2)
Spleen (2)
Brain (2)
Liver (2)
Endocardial cell (1)
Cerebral cortex glial cell (1)
Ovarian surface epithelial cell (1)
MRC-5 cell (1)
Bone marrow macrophage (1)
Nasal mucosa (1)
Endothelial cell (1)
Astrocyte (1)
Lymph node (1)
Kidney cell (1)
Embryonic fibroblast (1)
Bronchoalveolar lavage (1)
Primary cell (1)

Disease

COVID-19 (5)
Disease free (5)
Human immunodeficiency virus infectious disease (5)
Lymphoma (2)
Cervix carcinoma (2)
Not Available (1)
Kaposi's sarcoma (1)
Multiple sclerosis (1)
Hepatitis C (1)
Coronavirus infectious disease (1)
Ovarian carcinoma (1)
Dengue disease (1)
Severe acute respiratory syndrome (1)
Leigh disease (1)
Chronic fatigue syndrome (1)
Leishmaniasis (1)
Breast cancer (1)
Wounds and Injuries (1)
Influenza (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (39)
Bottom-up proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (12)
Mass spectrometry (9)
Data-dependent acquisition (8)
Gel-based experiment (5)
Mass spectrometry assay (3)
Immunopeptidomics (3)
Top-down proteomics (3)
MSE (2)
SRM/MRM (2)
Data-independent acquisition (2)
SWATH MS (2)
ILLUMINA, Illumina HiSeq 2500 (1)
PAcIFIC (1)
DiaPASEF (1)
All-ion fragmentation (1)
HDMSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
NextSeq 500 (2)
Q Exactive HF (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Scanpy (hash 98de5d1a) (1)
Chromium Next GEM Single Cell 5' Reagent Kits (10x Genomics) (1)
10xGenomics Chromium 3'v3 (1)
CryoStor® CS10 Freezing Medium (Cat. No. 100-1061; StemCell Technologies) (1)
10X Genomics Chromium (1)
NA (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Orbitrap Fusion Tribrid mass spectrometer (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
TimsTOF Ultra (Bruker Daltonics timsTOF series) (1)
LTQ Orbitrap Velos (1)
Q Exactive Plus (1)
Q Exactive (1)
TimsTOF SCP (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
LECO Pegasus III, GCTOFMS (1)
Flow injection analysis MS - positive (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2026 (40)
2025 (19)
2020 (16)
2013 (16)
2022 (13)
2021 (13)
2023 (12)
2024 (10)
2015 (8)
2019 (6)
2016 (5)
2011 (5)
2010 (5)
2018 (4)
2014 (3)
2012 (3)
2009 (3)
2017 (3)
2008 (1)
2007 (1)

UNIPROT ID/AC

P01574 (1)
P01562 (1)

CHEBI ID

CHEBI:17368 (4)
CHEBI:16643 (3)
CHEBI:73858 (3)
CHEBI:17351 (3)
CHEBI:17203 (3)
CHEBI:72998 (3)
CHEBI:17750 (3)
CHEBI:16919 (3)
CHEBI:32816 (3)
CHEBI:30769 (3)
CHEBI:17769 (2)
CHEBI:27542 (2)
CHEBI:15867 (2)
CHEBI:64575 (2)
CHEBI:22660 (2)
CHEBI:16244 (2)
CHEBI:32398 (2)
CHEBI:28044 (2)
CHEBI:29016 (2)
CHEBI:17561 (2)
CHEBI:506227 (2)
CHEBI:71464 (2)
CHEBI:28842 (2)
CHEBI:73851 (2)
CHEBI:32365 (2)
CHEBI:28610 (2)
CHEBI:73060 (2)
CHEBI:17553 (2)
CHEBI:15729 (2)
CHEBI:59132 (1)

Metabolite Name

L-Methionine (4)
Cytidine (4)
Choline (3)
Hypoxanthine (3)
L-Phenylalanine (3)
Creatine (3)
4-Hydroxybenzaldehyde (3)
L-Arginine (3)
L-Lysine (3)
Coumesterol (2)
Heptadecanoic acid (2)
N-Acetylserine (2)
Ne,Ne dimethyllysine (2)
Isopentenyl pyrophosphate (2)
Indolepyruvate (2)
Cis-Vaccenic acid (2)
Palmitoleic acid (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Salicyluric acid (2)
Methyl jasmonate (2)
Glutamylthreonine (2)
Deoxycholic acid (2)
Traumatic acid (2)
Benzofuran (2)
Maleic acid (2)
Ricinoleic acid (2)
D-Glucose (2)
N-Acetylputrescine (2)
L-Kynurenine (2)
Betaine (2)

First Public Date

2025 (79)
2026 (62)
2020 (48)
2024 (46)
2014 (45)
2023 (43)
2022 (36)
2021 (36)
2019 (30)
2018 (21)
2015 (11)
2017 (10)
2016 (9)
2013 (6)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

1. Department of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 2. Department of Epidemiology, Gillings School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 3. Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA (2)
Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (2)
Department of Molecular Microbiology & Immunology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
State Key Laboratory of Virology and Hubei Province Key Laboratory of Allergy and Immunology, Institute of Medical Virology, TaiKang Center for Life and Medical Sciences, TaiKang Medical School, Wuhan University (1)
Frontiers Science Center for Immunology and Metabolism, Medical Research Institute, Whuhan University Donghu Road, No. 115, Wuchang District, Wuhan, Hubei Province, P.R. China. 430071 (1)
Microbiology, Immunology and Pathology Department; Colorado State University; USA (1)
Department of Medicine, Department of Microbiology & Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. (1)
Department of Microbiology and Immunology University of California, San Francisco (UCSF) USA (1)
Charité Universitätsmedizin Berlin Institute of Medical Immunology (1)
Medical Univeristy of South Carolina Division of Infectious Diseases Department of Microbiology and Immunology (1)
Department of Immunology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore (1)
Department of Microbiology and Immunology, University of Iowa, Iowa City, IA (1)
Departments of Pathology and Microbiology & Immunology, Dalhousie University, Halifax, Canada. (1)
Department of Microbiology & Immunology UNC School of Medicine UNC-Chapel Hill (1)
Department of Immunology, Weizmann institute of Science, Rehovot, Israel 7610001 (1)
Departments of Biochemistry & Molecular Biology and Microbiology & Immunology Medical University of South Carolina USA (1)
Cambridge Institute for Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, UK (1)
Paul J Lehner PhD FRCP FMed Sci FRS Sheila Joan Smith Professor of Immunology Wellcome Principal Fellow and Honorary Consultant University of Cambridge CITIID Cambridge Biomedical Campus Cambridge CB2 0AW (1)
Associate Professor Microbiology and Immunology Department Upstate Medical University Weiskotten Hall Rm. 2273 766 Irving Avenue Syracuse, NY 13210 Tel 315.464.5870 (1)
Department of Microbiology and Immunology, Eulji University School of Medicine,Daejeon, South Korea (1)
Institute of Virology and Immunology IVI, Bern, Switzerland; Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland (1)
Gladstone Institure for Immunology; The J David Gladstone Institutes; San Francisco, CA, USA (1)
Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center; Vanderbilt-Ingram Cancer Center; Vanderbilt Center for Immunobiology, and Vanderbilt Institute for Infection, Immunology, and Inflammation, Nashville, TN, 37232-2363, USA., (1)
Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne, 3000, Victoria, Australia. (1)
Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA (1)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
Chinese Academy of Medical Science (CAMS) Oxford Institute (COI), University of Oxford; Oxford, U.K.; 3MRC Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford; Oxford, U.K. (1)
Clinical Collaboration Unit Translational Immunology, University Hospital Tübingen, Tübingen, Germany (1)