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ProteomicsProteomics of PHIKZ-infected PAO1 cells after ASO KD of chmA, nvRNAP, picA
Proteomics of PHIKZ-infected cells after ASO-based knockdown. We show specific knockdown of targeted proteins with limited off-targets.
ORGANISM(S): Pseudomonas aeruginosa PAO1H2O Bacteria 
2025-07-23 | PXD062538 | Pride
Pseudomonas Phage 
TranscriptomicsIntegrative phenotypic and transcriptomic validation of an alveolar-like macrophage model reveals early host–pathogen dynamics during Aspergillus fumigatus infection
The saprophytic mold Aspergillus fumigatus produces small (2-3 µm) airborne spores (conidia) that can reach the lung alveoli upon inhalation. There, they encounter the surfactant-rich environment of the alveolar epithelium and initiate swelling and germination. Primary alveolar macrophages are essen...
ORGANISM(S): Homo sapiens 
2026-10-02 | E-MTAB-17130 | biostudies-arrayexpress
TranscriptomicsDamID (LmnB1/Dam) Log2 ratios of C57Bl/6 fibroblasts and RAG2-/- pro-B cells.
Comparison of DamID profiles and LAD patterning across cell types reveals regions of variable LADs LmnB1 interactions at the nuclear periphery of C57Bl/6 pro-B cells and fibroblasts were identified by DamID in duplicate for both pro-B and fibroblasts (4 samples total). For each sample, Dam-LmnB1/Dam...
ORGANISM(S): Mus musculus 
2014-12-16 | E-GEOD-56990 | biostudies-arrayexpress
TranscriptomicsTranscriptomic analysis of TLR4 pathways in a murine model of chronic pulmonary inflammation and carcinogenesis
Toll like receptor 4 (TLR4), an innate immunity gene, is involved in responses to several pulmonary agonists including endotoxin (LPS; Poltorak et al.,1998), ozone (O3 ,Kleeberger et. al., 2001), Pseudomonas aeruginosa (Faure et al, 2004), and hyperoxia (Zhang et al, 2005). TLR4 appears to partially...
ORGANISM(S): Mus musculus 
2009-12-12 | E-GEOD-8504 | biostudies-arrayexpress
TranscriptomicsGENCODE PCR-Seq Batch XII
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification of at least one of their unique splice junctions followed by sequencing. The experiment ...
ORGANISM(S): Homo sapiens 
2014-11-26 | E-MTAB-3122 | biostudies-arrayexpress
TranscriptomicsGENCODE PCR-Seq Batch XIV
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification of at least one of their unique splice junctions followed by sequencing. The experiment ...
ORGANISM(S): Homo sapiens 
2014-12-16 | E-MTAB-3168 | biostudies-arrayexpress
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